F15836

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15836

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15836

Determination of introduced cDNA(s)

  • RAFL05-08-A02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-A02 - Resource: pda00953

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-A02 - full reading 
    AGTCAGCTCC GAGTCTGCGT TTTACTTCTT CTCCTTGAGT TTCTTCTTCT 
    AGATCTGATC GCGAATCACC AAAAGGTTTT ATTTTATACA ATGGGTCGTG 
    GAAACAGCTG TGGTGGAGGT CAAAGCTCAT TGGATTATCT CTTTGGTGGT 
    GACGCTCCTG CTCCTAAGCC AGTTCCAGCT CCTCGTCCCG CTCCTACTGA 
    GTCTAACAAC GGACCTGCAC CACCAGTAAC AGCTGTGACT GCAACCGCAC 
    TCACGACTGC TACTACTTCT GTTGAGCCTG CAGAGCTTAA CAAGCAGATT 
    CCTGCTGGTA TCAAAACTCC TGTTAACAAC TATGCCAGAG CTGAAGGACA 
    GAACACCGGC AACTTCCTCA CTGACCGTCC TTCGACCAAA GTTCACGCAG 
    CTCCGGGAGG AGGATCATCC TTGGATTATC TCTTCACTGG TGGCAAGTAA 
    AATAATTGCA AAGACCTTTA TCTATCCATT GTCTTTGCTG CGTTATCTCA 
    CTATGAAACT GTTTGATGTG AGCCTTTAAA TGATAAGAAG TCGGTTTCTT 
    GTCTCAACTC TTATCTGTAA TATTTTGCTG AAAAAATGTT TGAATCAAAA 
    ACTTCCCAAC TTGTCTCAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT2G03680.1 [+] show detail - spiral1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G03680.1

    Model type
    Protein coding
    Short Description
    spiral1
    Curator Summary
    The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.
    Computational Description
    SPIRAL1 (SPR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anisotropic cell growth, unidimensional cell growth; LOCATED IN: spindle microtubule, cortical microtubule, transverse to long axis, preprophase band, phragmoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like2 (TAIR:AT1G69230.2); Has 191 Blast hits to 165 proteins in 37 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 6; Plants - 146; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR