F15843

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15843

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15843

Determination of introduced cDNA(s)

  • RAFL09-13-C16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-13-C16 - Resource: pda07978

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-13-C16 - full reading 
    CTTTCTCATC TCCTCCATTG GCTCTTATTT CCTCAGTTGC CGTGAAAATC 
    TGTAAACGGG TAGTTCATAA TGGCAACTGT GACTGCTTCT TCTAACTTTG 
    TGTCAAGAAC TTCACTTTTC AACAATCATG GTGCTTCTTC ATGCTCTGAT 
    GTCGCTCAGA TTACCTTAAA AGGCCAATCC TTGACTCATT GTGGGTTAAG 
    GTCATTCAAC ATGGTGGATA ACCTTCAGAG GAGATCTCAA GCTAAACCTG 
    TTTCTGCTAA ATCCTCAAAG AGATCTTCTA AAGTTAAGAC TGCTGGTAAG 
    ATTGTGTGTG AGAAAGGAAT GTCTGTGATT TTTATTGGAG CTGAAGTTGG 
    TCCATGGAGT AAAACTGGTG GTCTTGGTGA TGTTCTCGGT GGTCTACCTC 
    CAGCTCTTGC TGCTAGAGGC CACCGTGTGA TGACAATTTG TCCTCGGTAT 
    GACCAATATA AAGATGCTTG GGACACTTGT GTTGTGGTTC AGATCAAAGT 
    TGGGGATAAA GTTGAGAATG TTCGTTTCTT CCATTGCTAC AAACGAGGAG 
    TTGATCGTGT CTTTGTTGAC CATCCAATCT TTCTTGCTAA GGTTGTGGGC 
    AAAACAGGAT CCAAAATCTA TGGTCCTATA ACTGGAGTAG ACTACAATGA 
    CAACCAACTC CGGTTCAGTT TGTTGTGTCA GGCTGCTCTT GAGGCACCAC 
    AGGTTCTGAA CCTGAACAGC AGCAAGTACT TCTCTGGACC ATATGGTGAA 
    GATGTAGTCT TTGTTGCCAA TGACTGGCAC ACTGCTCTAC TTCCATGTTA 
    CCTCAAATCT ATGTATCAAT CCCGCGGAGT CTACATGAAT GCAAAGGTGG 
    TCTTCTGCAT TCACAACATA GCCTACCAGG GAAGATTTGC CTTTGATGAC 
    TATTCCCTTC TCAACTTGCC CATCAGCTTT AAAAGTTCTT TCGACTTCAT 
    GGACGGGTAT GAAAAGCCAG TAAAAGGACG GAAAATTAAC TGGATGAAGG 
    CTGCAATTCT GGAAGCTCAC CGTGTCTTAA CAGTTAGTCC ATACTACGCT 
    CAAGAACTCA TCTCTGGAGT TGATAGAGGC GTGGAATTGC ATAAATATCT 
    TCGAATGAAA ACAGTTTCCG GAATTATTAA TGGAATGGAT GTTCAAGAAT 
    GGAACCCGTC TACTGACAAG TACATCGATA TCAAATACGA TATTACCACT 
    GTTACAGATG CTAAACCATT GATCAAAGAA GCACTTCAGG CTGCTGTTGG 
    ACTTCCCGTG GACAGGGATG TCCCGGTTAT CGGTTTCATA GGGAGATTGG 
    AGGAGCAGAA GGGTTCTGAT ATTCTAGTGG AAGCTATTTC CAAGTTCATG 
    GGGCTCAATG TTCAGATGGT TATCCTTGGG ACTGGAAAGA AGAAGATGGA 
    GGCTCAGATT CTTGAACTAG AAGAGAAGTT CCCAGGGAAG GCGGTTGGAG 
    TGGCGAAATT CAACGTGCCA TTGGCTCATA TGATCACTGC TGGAGCTGAC 
    TTCATCATTG TCCCAAGCAG GTTTGAGCCG TGTGGTCTCA TTCAGCTGCA 
    CGCAATGAGA TATGGAACCG TCCCTATTGT GGCATCTACT GGTGGACTTG 
    TGGACACTGT GAAAGATGGC TACACAGGTT TCCACATTGG AAGATTCAAC 
    GTCAAGTGTG AAGTTGTGGA TCCAGATGAT GTGATAGCAA CAGCAAAGGC 
    TGTGACAAGA GCCGTTGCAG TATATGGAAC ATCCGCAATG CAAGAAATGG 
    TCAAGAACTG CATGGACCAA GACTTCTCCT GGAAGGGACC TGCGAGGTTG 
    TGGGAGAAGG TACTATTGTC CCTTAATGTG GCGGGAAGTG AAGCCGGAAC 
    CGAGGGTGAA GAGATAGCTC CTCTGGCCAA GGAGAACGTA GCGACGCCGT 
    GAGAATATGA CTTTTGTTTT GTGTCAAAGT GGTTTGAAGA AAGCGTTGGG 
    AAGTTAGGAG TAGGGAAGGT TGAGGAAAAG TAATGTATAT TGGAAATGTT 
    AGAGTCTAAT ATAATAATAA AAAAACTTTG TGAACACAAT CAATCATATA 
    TAAGTTTATC ATCACAATCA ATAAAAAATG GTAGAATTTT GC

    Gene models with high sequence identity

    1. AT1G32900.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 4.9e-101
    HAMAP Glycogen/starch synthases, ADP-glucose type 33.425
    HMMPanther STARCH SYNTHASE 4e-209
    HMMPanther GLYCOSYLTRANSFERASE 4e-209
    HMMTigr Glycogen/starch synthases, ADP-glucose type 1.2e-202
    HMMPfam Starch synthase, catalytic domain 5.3e-72
    HMMPfam Glycosyl transferase, group 1 3.7e-20

    See the detailed result >

    AT1G32900.1

    Model type
    Protein coding
    Short Description
    UDP-Glycosyltransferase superfamily protein
    Computational Description
    UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, glucan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 2 (TAIR:AT3G01180.1); Has 13950 Blast hits to 13932 proteins in 3602 species: Archae - 351; Bacteria - 6813; Metazoa - 7; Fungi - 173; Plants - 5477; Viruses - 0; Other Eukaryotes - 1129 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR