F15903

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15903

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15903

Determination of introduced cDNA(s)

  • RAFL05-13-F11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-F11 - Resource: pda02566

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-F11 - full reading 
    GTGGAGAAGG AGAAGAAGGA TAAGGATGAT AACGGTAAGC GAAGTTTCCT 
    CTTACTCTTC TTCTTCTTCA AACTTCGCGT CTCTGTCTCG TCTCAATCAC 
    AAATCATCTT CGAGATTGCG AAGCTCTTCT CTTTACAAAG GAAGCTTCTT 
    CTCTGTTTCG ACAAAGACCA GGAGGAACAC TTGTAAAGCC AAATCATGGA 
    ATCTCGGTCT TGTTATCAAC TCTAGAAGCT CTGAGGCTTC GGTTTTTGAT 
    CCGTTGGGGA TCAATCCAGA TGAAACTTCT GGTTTAAGTA GCATTTGGGA 
    AAGCTTTGTG AGTCTTTTGT CACCATCATT TGAAAGCTCT TCCGGTAACA 
    GGCGAGATAA GCCGTCTTCT GGTAGAGGCG TGGCAGCTGC TATTGAGGAC 
    AGTTCCATTG ATTTTGGAGA TTTCTTCAAA GGGCCATTGC CAGGGAAGTT 
    TCTGAAGCTT CTTGGGTTTT TAGCTCTCTC TCGGCTTGGA ATTTACATAC 
    CACTCGGCGG GGTTAATCGA GAAGCTTTTG TTGGAAATTT GGATCAGAAT 
    AGCATTTTGA GCACTTTGGA TACATTTTCT GGTGGAGGCA TAGGTAGACT 
    TGGTATATGT TCTCTCGGGA TTGTTCCTTT CATCAACGCT CAGATTGTGT 
    TTCAGCTTCT TGCTCAAGTC TATCCAAAGT TGCAAGATCT TCAGAAAAAA 
    GAAGGTGAAG CTGGTAGAAA AAAGATTCTT CAGTATACTA GATATGCTTC 
    AGTTGGTTTT GCGATAGTAC AAGCAATCGG ACAAGTGTTT TACCTTCGTC 
    CTTACGTTAA TGACTTCAGC ACGGAATGGG TTGTTTCTTC TGTTACGTTG 
    TTAACGCTTG GTTCTGTTCT CACTACATAT ATTGGAGAGA GAATCTCTGA 
    TCTGAAACTT GGAAATGGCA CTTCCCTATT GATTTTCACA AGTATCATCT 
    CTTACTTGCC TGCATCATTC GGTAGAACAA CAGCAGAGGC CTTACAGGAA 
    GGAAACTATA CTGGTCTTGG AACCATCGTT GTTTCATTTC TCCTCTTGGT 
    ACTCGGGATA GTATATGTTC AGGAAGCAGA GAGGAAAATT CCGCTCAATT 
    ATGCCTCGCG ATACACCAGC AAAGCTGGTG GGCTTCAGAA ATCTGCTTAT 
    CTTCCATTCA AGGTCAATAG TGCGGGAGTA ATGCCTATCA TATTCTCCAC 
    ATCATCTCTT GCTCTTCCTG CTACTTTAGC ACGATTTACC GGCATATCTG 
    CTTTGAAGAA TGTTGCTTTT GCTTTAACCC CTGGAGGTTC TTTCTATCTT 
    CCAACCAATA TACTTCTCAT AGCTTTCTTC AACTACTACT ACACTTTCTT 
    GCAACTTGAC CCGGACGACG TGAGTGAACA ATTAAAACGC CAAGGTGCAT 
    CAATCCCTCT AGTCCGACCT GGTAAAAGCA CTGCTCTCTT CATCAAAACC 
    GTCCTTGGCC GGATATCGGT TCTTGGTTCT GCATTTCTGG CTGTTCTAGC 
    TGCTGGTCCT GCTGTAGTCG AACAGATCAC TCACTTGACA GCATTCAGAG 
    GATTTGCAGG CACTTCTGTT CTGATCCTTG TCGGGTGTGC GACAGATACT 
    GCAAGAAAGG TTCAAGCAGA GATAATCTCG CAAAAGTACA AGAACATTGA 
    GTTTTACGAG CTTGACAAGT ATGATCCATG AACTGGACCT TCTGTTTTAC 
    ATATAATACC CATCAAACCA AGTTACTGTG TTCTCTTGTC ATAGATTGTA 
    ACAAATGTTT TAAACTTTGA TTAGTATATA ATGCACTTTT GG

    Gene models with high sequence identity

    1. AT2G18710.1 [+] show detail - SECY homolog 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    superfamily SecY protein 7.4e-89
    PatternScan SecY protein 0
    PatternScan SecY protein 0
    HMMTigr SecY protein 1.2e-108
    HMMPanther PROTEIN TRANSLOCASE SECY SUBUNIT 6.7e-175
    HMMPanther SecY protein 6.7e-175
    HMMPfam SecY protein 1.5e-90

    See the detailed result >

    AT2G18710.1

    Model type
    Protein coding
    Short Description
    SECY homolog 1
    Curator Summary
    Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.
    Computational Description
    SECY homolog 1 (SCY1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G31530.1); Has 9180 Blast hits to 9165 proteins in 2700 species: Archae - 72; Bacteria - 5385; Metazoa - 19; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 3600 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR