F15903

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15903

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15903

Determination of introduced cDNA(s)

  • RAFL05-13-F11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-F11 - Resource: pda02566

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-F11 - full reading
    GTGGAGAAGG AGAAGAAGGA TAAGGATGAT AACGGTAAGC GAAGTTTCCT 
    CTTACTCTTC TTCTTCTTCA AACTTCGCGT CTCTGTCTCG TCTCAATCAC
    AAATCATCTT CGAGATTGCG AAGCTCTTCT CTTTACAAAG GAAGCTTCTT
    CTCTGTTTCG ACAAAGACCA GGAGGAACAC TTGTAAAGCC AAATCATGGA
    ATCTCGGTCT TGTTATCAAC TCTAGAAGCT CTGAGGCTTC GGTTTTTGAT
    CCGTTGGGGA TCAATCCAGA TGAAACTTCT GGTTTAAGTA GCATTTGGGA
    AAGCTTTGTG AGTCTTTTGT CACCATCATT TGAAAGCTCT TCCGGTAACA
    GGCGAGATAA GCCGTCTTCT GGTAGAGGCG TGGCAGCTGC TATTGAGGAC
    AGTTCCATTG ATTTTGGAGA TTTCTTCAAA GGGCCATTGC CAGGGAAGTT
    TCTGAAGCTT CTTGGGTTTT TAGCTCTCTC TCGGCTTGGA ATTTACATAC
    CACTCGGCGG GGTTAATCGA GAAGCTTTTG TTGGAAATTT GGATCAGAAT
    AGCATTTTGA GCACTTTGGA TACATTTTCT GGTGGAGGCA TAGGTAGACT
    TGGTATATGT TCTCTCGGGA TTGTTCCTTT CATCAACGCT CAGATTGTGT
    TTCAGCTTCT TGCTCAAGTC TATCCAAAGT TGCAAGATCT TCAGAAAAAA
    GAAGGTGAAG CTGGTAGAAA AAAGATTCTT CAGTATACTA GATATGCTTC
    AGTTGGTTTT GCGATAGTAC AAGCAATCGG ACAAGTGTTT TACCTTCGTC
    CTTACGTTAA TGACTTCAGC ACGGAATGGG TTGTTTCTTC TGTTACGTTG
    TTAACGCTTG GTTCTGTTCT CACTACATAT ATTGGAGAGA GAATCTCTGA
    TCTGAAACTT GGAAATGGCA CTTCCCTATT GATTTTCACA AGTATCATCT
    CTTACTTGCC TGCATCATTC GGTAGAACAA CAGCAGAGGC CTTACAGGAA
    GGAAACTATA CTGGTCTTGG AACCATCGTT GTTTCATTTC TCCTCTTGGT
    ACTCGGGATA GTATATGTTC AGGAAGCAGA GAGGAAAATT CCGCTCAATT
    ATGCCTCGCG ATACACCAGC AAAGCTGGTG GGCTTCAGAA ATCTGCTTAT
    CTTCCATTCA AGGTCAATAG TGCGGGAGTA ATGCCTATCA TATTCTCCAC
    ATCATCTCTT GCTCTTCCTG CTACTTTAGC ACGATTTACC GGCATATCTG
    CTTTGAAGAA TGTTGCTTTT GCTTTAACCC CTGGAGGTTC TTTCTATCTT
    CCAACCAATA TACTTCTCAT AGCTTTCTTC AACTACTACT ACACTTTCTT
    GCAACTTGAC CCGGACGACG TGAGTGAACA ATTAAAACGC CAAGGTGCAT
    CAATCCCTCT AGTCCGACCT GGTAAAAGCA CTGCTCTCTT CATCAAAACC
    GTCCTTGGCC GGATATCGGT TCTTGGTTCT GCATTTCTGG CTGTTCTAGC
    TGCTGGTCCT GCTGTAGTCG AACAGATCAC TCACTTGACA GCATTCAGAG
    GATTTGCAGG CACTTCTGTT CTGATCCTTG TCGGGTGTGC GACAGATACT
    GCAAGAAAGG TTCAAGCAGA GATAATCTCG CAAAAGTACA AGAACATTGA
    GTTTTACGAG CTTGACAAGT ATGATCCATG AACTGGACCT TCTGTTTTAC
    ATATAATACC CATCAAACCA AGTTACTGTG TTCTCTTGTC ATAGATTGTA
    ACAAATGTTT TAAACTTTGA TTAGTATATA ATGCACTTTT GG

    Gene models with high sequence identity

    1. AT2G18710.1 [+] show detail - SECY homolog 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    FPrintScan SecY protein 3e-76
    superfamily SecY protein 7.4e-89
    PatternScan SecY protein 0
    PatternScan SecY protein 0
    HMMTigr SecY protein 1.2e-108
    HMMPanther PROTEIN TRANSLOCASE SECY SUBUNIT 6.7e-175
    HMMPanther SecY protein 6.7e-175
    HMMPfam SecY protein 1.5e-90

    See the detailed result >

    AT2G18710.1

    Model type
    Protein coding
    Short Description
    SECY homolog 1
    Curator Summary
    Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.
    Computational Description
    SECY homolog 1 (SCY1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G31530.1); Has 9180 Blast hits to 9165 proteins in 2700 species: Archae - 72; Bacteria - 5385; Metazoa - 19; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 3600 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR