F15907

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15907

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15907

Determination of introduced cDNA(s)

RAFL21-13-B21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL21-13-B21 - Resource: pda20247

full reading [+] show sequence

CCGTGTCTTT TCATTTCTCT TCTTCCGGCG TTTTCTCTCC GCCGTTTCGC 
CACCGTACGT GACAATGTCT GTTTCTCTCT CCGCCGCCTC TCACTTACTC 
TGTTCCTCCA CCAGAGTCTC TCTTTCCCCC GCCGTCACCT CTTCGTCCTC 
GTCCCCTGTC GTTGCTCTTT CTTCCTCTAC ATCGCCACAT TCTCTTGGAA 
GCGTCGCATC TTCTTCTCTG TTTCCTCACT CCTCCTTCGT GCTTCAGAAA 
AAACATCCGA TCAATGGGAC GAGCACGAGG ATGATTTCAC CAAAATGTGC 
CGCTTCTGAT GCAGCTCAAT TGATAAGCGC TAAAGAAGAT ATCAAAGTTC 
TTCTCCGGAC TAAGTTTTGC CATCCCATCT TGGTTAGATT GGGGTGGCAC 
GATGCTGGTA CTTATAACAA GAATATTGAG GAGTGGCCAC TGAGAGGTGG 
AGCTAATGGA AGTCTTAGGT TTGAGGCTGA GCTTAAGCAT GCTGCAAATG 
CTGGTCTGCT TAATGCTTTA AAGCTCATTC AGCCTCTCAA AGACAAGTAT 
CCTAACATCT CTTATGCGGA CTTATTCCAG TTAGCTAGTG CCACAGCAAT 
AGAGGAGGCT GGTGGTCCTG ATATCCCGAT GAAATATGGG AGAGTTGATG 
TTGTAGCACC TGAACAGTGT CCAGAAGAAG GAAGACTCCC TGATGCTGGA 
CCTCCTTCAC CAGCTGATCA TTTGAGAGAT GTTTTCTACA GAATGGGACT 
TGATGACAAG GAAATAGTTG CCTTGTCTGG TGCACATACC TTAGGGAGAG 
CCAGACCAGA CCGTAGTGGT TGGGGAAAAC CTGAGACAAA GTACACGAAA 
ACTGGACCTG GAGAAGCAGG AGGACAGTCA TGGACAGTGA AATGGCTCAA 
GTTCGACAAC TCTTATTTCA AGGATATCAA AGAAAAGAGG GACGACGATC 
TTCTGGTGTT ACCCACTGAT GCGGCGCTAT TTGAAGATCC TTCATTCAAG 
AACTATGCAG AGAAGTATGC TGAAGATGTG GCTGCATTTT TCAAGGACTA 
CGCTGAAGCC CATGCCAAGC TTAGCAATCT CGGTGCAAAA TTTGATCCTC 
CCGAGGGCAT AGTCATTGAA AACGTTCCAG AGAAGTTCGT AGCTGCAAAG 
TATTCTACGG GAAAGAAGGA GCTTTCGGAT TCGATGAAAA AGAAGATAAG 
AGCAGAGTAT GAAGCAATTG GAGGAAGCCC AGATAAGCCA TTACCCACAA 
ATTACTTCCT CAACATCATA ATTGCCATTG GCGTTTTGGT CCTCTTGTCC 
ACTCTCTTTG GTGGTAATAA CAACTCCGAT TTCTCTGGTT TCTAATTGAC 
AAATTATATA TTTTGATTTC TCTTACCTAC ATACATAATT ACGTGGTGAT 
CATATATTCC TTGCAAACAA AAACATCATT GTTAAAGTTT GCTTGAATAA 
AATCACCTTA TAAATAACAA AAAAA

Gene models with high sequence identity

AT1G77490.1 [+] show detail - thylakoidal ascorbate peroxidase
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.8e-22
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.8e-22
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.8e-22
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.8e-22
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.8e-22
FPrintScan	Plant ascorbate peroxidase	2.2e-16
FPrintScan	Plant ascorbate peroxidase	2.2e-16
FPrintScan	Plant ascorbate peroxidase	2.2e-16
FPrintScan	Plant ascorbate peroxidase	2.2e-16
FPrintScan	Plant ascorbate peroxidase	2.2e-16
superfamily	Haem peroxidase	1.8e-75
ProfileScan	Haem peroxidase, plant/fungal/bacterial	18.423
PatternScan	Peroxidases heam-ligand binding site	0
Gene3D	no description	1.6e-36
HMMPfam	Haem peroxidase, plant/fungal/bacterial	2.5e-46

See the detailed result >

AT1G77490.1

Model type: Protein coding
Short Description: thylakoidal ascorbate peroxidase
Curator Summary: Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description: thylakoidal ascorbate peroxidase (TAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: stromal ascorbate peroxidase (TAIR:AT4G08390.2); Has 7809 Blast hits to 7730 proteins in 1256 species: Archae - 55; Bacteria - 2313; Metazoa - 5; Fungi - 620; Plants - 3345; Viruses - 0; Other Eukaryotes - 1471 (source: NCBI BLink).
Link: InterPro Scan - TAIR