F15907

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15907

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15907

Determination of introduced cDNA(s)

  • RAFL21-13-B21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL21-13-B21 - Resource: pda20247

    full reading [+] show sequence

    Nucleotide sequence: RAFL21-13-B21 - full reading
    CCGTGTCTTT TCATTTCTCT TCTTCCGGCG TTTTCTCTCC GCCGTTTCGC 
    CACCGTACGT GACAATGTCT GTTTCTCTCT CCGCCGCCTC TCACTTACTC
    TGTTCCTCCA CCAGAGTCTC TCTTTCCCCC GCCGTCACCT CTTCGTCCTC
    GTCCCCTGTC GTTGCTCTTT CTTCCTCTAC ATCGCCACAT TCTCTTGGAA
    GCGTCGCATC TTCTTCTCTG TTTCCTCACT CCTCCTTCGT GCTTCAGAAA
    AAACATCCGA TCAATGGGAC GAGCACGAGG ATGATTTCAC CAAAATGTGC
    CGCTTCTGAT GCAGCTCAAT TGATAAGCGC TAAAGAAGAT ATCAAAGTTC
    TTCTCCGGAC TAAGTTTTGC CATCCCATCT TGGTTAGATT GGGGTGGCAC
    GATGCTGGTA CTTATAACAA GAATATTGAG GAGTGGCCAC TGAGAGGTGG
    AGCTAATGGA AGTCTTAGGT TTGAGGCTGA GCTTAAGCAT GCTGCAAATG
    CTGGTCTGCT TAATGCTTTA AAGCTCATTC AGCCTCTCAA AGACAAGTAT
    CCTAACATCT CTTATGCGGA CTTATTCCAG TTAGCTAGTG CCACAGCAAT
    AGAGGAGGCT GGTGGTCCTG ATATCCCGAT GAAATATGGG AGAGTTGATG
    TTGTAGCACC TGAACAGTGT CCAGAAGAAG GAAGACTCCC TGATGCTGGA
    CCTCCTTCAC CAGCTGATCA TTTGAGAGAT GTTTTCTACA GAATGGGACT
    TGATGACAAG GAAATAGTTG CCTTGTCTGG TGCACATACC TTAGGGAGAG
    CCAGACCAGA CCGTAGTGGT TGGGGAAAAC CTGAGACAAA GTACACGAAA
    ACTGGACCTG GAGAAGCAGG AGGACAGTCA TGGACAGTGA AATGGCTCAA
    GTTCGACAAC TCTTATTTCA AGGATATCAA AGAAAAGAGG GACGACGATC
    TTCTGGTGTT ACCCACTGAT GCGGCGCTAT TTGAAGATCC TTCATTCAAG
    AACTATGCAG AGAAGTATGC TGAAGATGTG GCTGCATTTT TCAAGGACTA
    CGCTGAAGCC CATGCCAAGC TTAGCAATCT CGGTGCAAAA TTTGATCCTC
    CCGAGGGCAT AGTCATTGAA AACGTTCCAG AGAAGTTCGT AGCTGCAAAG
    TATTCTACGG GAAAGAAGGA GCTTTCGGAT TCGATGAAAA AGAAGATAAG
    AGCAGAGTAT GAAGCAATTG GAGGAAGCCC AGATAAGCCA TTACCCACAA
    ATTACTTCCT CAACATCATA ATTGCCATTG GCGTTTTGGT CCTCTTGTCC
    ACTCTCTTTG GTGGTAATAA CAACTCCGAT TTCTCTGGTT TCTAATTGAC
    AAATTATATA TTTTGATTTC TCTTACCTAC ATACATAATT ACGTGGTGAT
    CATATATTCC TTGCAAACAA AAACATCATT GTTAAAGTTT GCTTGAATAA
    AATCACCTTA TAAATAACAA AAAAA

    Gene models with high sequence identity

    1. AT1G77490.1 [+] show detail - thylakoidal ascorbate peroxidase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
    FPrintScan Plant ascorbate peroxidase 2.2e-16
    FPrintScan Plant ascorbate peroxidase 2.2e-16
    FPrintScan Plant ascorbate peroxidase 2.2e-16
    FPrintScan Plant ascorbate peroxidase 2.2e-16
    FPrintScan Plant ascorbate peroxidase 2.2e-16
    superfamily Haem peroxidase 1.8e-75
    ProfileScan Haem peroxidase, plant/fungal/bacterial 18.423
    PatternScan Peroxidases heam-ligand binding site 0
    Gene3D no description 1.6e-36
    HMMPfam Haem peroxidase, plant/fungal/bacterial 2.5e-46

    See the detailed result >

    AT1G77490.1

    Model type
    Protein coding
    Short Description
    thylakoidal ascorbate peroxidase
    Curator Summary
    Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
    Computational Description
    thylakoidal ascorbate peroxidase (TAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: stromal ascorbate peroxidase (TAIR:AT4G08390.2); Has 7809 Blast hits to 7730 proteins in 1256 species: Archae - 55; Bacteria - 2313; Metazoa - 5; Fungi - 620; Plants - 3345; Viruses - 0; Other Eukaryotes - 1471 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR