F15936

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15936

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15936

Determination of introduced cDNA(s)

  • RAFL06-67-P21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-P21 - Resource: pda03286

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-67-P21 - full reading 
    ACAAGCCCTA CAACAACCAC AAAGCAAAAC ACTTACTTAG AAAGTCCAGA 
    AACATCCATT AACACATATG GCTAAAGACG TGGAAGGACC TGATGGATTT 
    CAGACGAGAG ATTACGAAGA TCCTCCGCCA ACACCGTTTT TCGACGCAGA 
    GGAGCTTACC AAGTGGTCTT TATACAGAGC AGTCATCGCC GAGTTCGTAG 
    CCACTCTCCT CTTCTTGTAC GTCACCGTTT TAACTGTCAT TGGTTACAAG 
    ATTCAGTCCG ACACAAAAGC CGGTGGAGTT GACTGCGGCG GCGTCGGAAT 
    CCTTGGCATC GCGTGGGCTT TTGGTGGCAT GATCTTCATC CTTGTCTACT 
    GCACCGCCGG TATCTCAGGT GGTCACATAA ACCCTGCGGT GACGTTTGGT 
    TTGTTCTTAG CCCGGAAGGT ATCGCTGATT AGGGCGGTGC TTTACATGGT 
    GGCTCAGTGT TTGGGTGCTA TTTGTGGAGT TGGGTTTGTG AAGGCATTTC 
    AAAGCTCTCA CTATGTTAAT TACGGTGGAG GAGCCAACTT TCTAGCTGAC 
    GGCTACAATA CAGGCACCGG ACTCGCGGCA GAGATCATCG GAACATTCGT 
    GCTTGTCTAC ACAGTCTTCT CCGCTACTGA TCCCAAACGC AACGCTAGAG 
    ACTCCCACGT TCCGGTTTTG GCGCCACTTC CGATTGGGTT TGCGGTGTTT 
    ATGGTACATT TGGCCACTAT TCCGATCACC GGAACCGGTA TCAACCCGGC 
    TAGGAGTTTC GGAGCCGCCG TAATCTTTAA CAAGAGCAAG CCATGGGATG 
    ACCACTGGAT ATTCTGGGTG GGACCATTCA TTGGAGCTAC GATAGCTGCA 
    TTTTATCACC AATTCGTTCT AAGGGCCTCA GGCTCCAAGT CCCTCGGTTC 
    ATTCAGAAGT GCAGCCAACG TTTAAACTTA GCCACGAAAG AAAAAAAGTG 
    TGCCTACAAT TATGTAGAAA CATATCCTCT TTTCCACTCG TATCTTAGCT 
    TCTTCCTATT TTCTATTTCT AACTGTGTGA TTCCATATTA AATCGAGTGA 
    AATGTTTTTC AATTCATCTT TGCAACGTAT GTAAGTTTGG TGTATTGAGA 
    AAAAAAAATC GAGAAAGACA ACTTTTTCTT CGATTAAAAA AAAAAAAAAA 
    A

    Gene models with high sequence identity

    1. AT2G37180.1 [+] show detail - Aquaporin-like superfamily protein
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Major intrinsic protein 4.6e-65
    HMMTigr Aquaporin 3.3e-92
    PatternScan Major intrinsic protein, conserved site 0
    HMMPanther AQUAPORIN-RELATED 6.9e-191
    HMMPanther Major intrinsic protein 6.9e-191
    FPrintScan Major intrinsic protein 2.1e-70
    FPrintScan Major intrinsic protein 2.1e-70
    FPrintScan Major intrinsic protein 2.1e-70
    FPrintScan Major intrinsic protein 2.1e-70
    FPrintScan Major intrinsic protein 2.1e-70
    FPrintScan Major intrinsic protein 2.1e-70
    superfamily Major intrinsic protein 3.5e-62
    HMMPfam Major intrinsic protein 1.7e-86

    See the detailed result >

    AT2G37180.1

    Model type
    Protein coding
    Short Description
    Aquaporin-like superfamily protein
    Curator Summary
    a member of the plasma membrane intrinsic protein PIP2. functions as aquaporin and is involved in dessication.
    Computational Description
    RESPONSIVE TO DESICCATION 28 (RD28); FUNCTIONS IN: water channel activity; INVOLVED IN: response to desiccation, response to water deprivation, transport, response to osmotic stress; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: shoot, root, flower, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 10809 Blast hits to 10795 proteins in 2215 species: Archae - 81; Bacteria - 5139; Metazoa - 1474; Fungi - 455; Plants - 2518; Viruses - 2; Other Eukaryotes - 1140 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR