F16020

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16020

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16020

Determination of introduced cDNA(s)

  • RAFL06-68-J11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-J11 - Resource: pda03301

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-J11 - full reading 
    AACAGAGGCA ACTACAACCG CCTTTCTTCT TCTTCCTCAT AGCAATCGAA 
    AACGCTTTCG CACTTTCTCT TGCTTTGACA ATTTCTGTTT TTATTCAATG 
    GGTTCTAGTC AAGATCTCTT CTTCCTCATC ATCGTTCTCT TCTCCTCGAT 
    TCTCTTTCCT CAGCTTTCCT CGCTACCGGA TCCGTCGTTT TACGATTATC 
    TCCGGGAAAG CAATCTTCCC GCCGGAATAG TTCCCAAAGG AGTTACCAAT 
    TTCTCGATCG ACATCAAAAC GGGGCGTTTC ACCGTCGCTC TCCCTGTTCC 
    TTGCGATGCT AAATTCGAGA ATCAGTTCCA CTTCGACTAC AATATCTCCG 
    GCGTTCTCTC CGATGGACGG ATCGGGAATT TATCTGGTGT GACGCAGAAG 
    GAGCTGTTTC TTTGGTTTGC TGTGAAAGGA ATACATGTTG ATCCGCAGAG 
    CTCTGGGTTA ATTCACTTTG ATGTCGGTGT CGCTGATAAG CAGCTTTCTC 
    TTTCGCTCTT TGAGTCGCCT CGAGATTGCA CCGCCGCGGA ATCTCAACCT 
    CGTGCGGTTG ATCTCTCTAG ACCCCGTGAT TTGGAGAAGC AATCTGAAGA 
    AATGCAATCG ACAATGCAGA AGCAACCTGA AGAGATCCAA TCGATATTTG 
    GACCACGAAG AAGTCGCTGG ACATTAGGTT TTTGATCTGA GGCTTAGAAG 
    GAAGTGCAAA TTCTACTGAT GATGTCTTTT GGTATGGTGT GTGTTGTAAA 
    AAGTTTGGTT TGTAGTAGTT TTTTTTGTTT TACACCATAT CATAGTATCA 
    TCAACAGCAT AAGCTTAGGA GGCATGAATA CTTTTTTTTC TTTTTGCTTT 
    GGTACACGAT TAGGGGTTAA GACATATATA TATACATATA TGCTTGTGGA 
    TTTTTCACCA GAAACTGTTG TGTTATCACA CTCTTTTCTT GGTTTTTTTA 
    CTTTGTAAAA GAAAGGATGT TGAGGATACA TGAATCTTTT TGTTTTGTGG 
    TTGTTAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G16380.1 [+] show detail - Protein of unknown function, DUF538
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Protein of unknown function DUF538 4e-33
    PatternScan Zinc finger, C2H2-type 0
    HMMPfam Protein of unknown function DUF538 5.7e-28

    See the detailed result >

    AT5G16380.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Computational Description
    Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G07470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR