F16025

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16025

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16025

Determination of introduced cDNA(s)

  • RAFL09-15-B12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-B12 - Resource: pda01996

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-15-B12 - full reading 
    ATCAACAATA ATAGAAAAAG CCCTAACTTT CTCCGTCGAT GGCTTTCTTC 
    TCCTACTTTT TCTTCCTCTT GACTCTTTCT TCTCCTTCTT CTTCTGCTTC 
    CTCTTCAAAC TCCTTGACTT ACATCGTCCA CGTCGACCAC GAAGCTAAAC 
    CCTCAATCTT CCCCACTCAT TTTCACTGGT ACACTTCCTC TCTTGCCTCA 
    CTCACCTCTT CTCCTCCCTC CATTATCCAC ACATACGACA CCGTTTTCCA 
    TGGCTTCTCC GCTAGACTCA CTTCACAAGA CGCTAGTCAA CTCTTAGACC 
    ATCCTCATGT CATCTCTGTT ATCCCGGAAC AAGTCCGTCA CTTGCACACC 
    ACTCGTTCCC CTGAGTTTCT TGGTCTTAGG TCCACCGACA AAGCGGGTCT 
    ACTCGAAGAG TCTGATTTCG GGTCGGATCT AGTTATCGGA GTTATCGATA 
    CTGGTGTTTG GCCCGAAAGA CCTAGCTTTG ATGACCGTGG TCTTGGTCCT 
    GTTCCCATTA AATGGAAAGG CCAATGTATC GCTTCCCAAG ATTTTCCGGA 
    GTCTGCTTGT AACCGTAAAC TCGTCGGAGC TAGATTCTTC TGCGGTGGGT 
    ATGAAGCAAC CAACGGGAAA ATGAATGAAA CGACTGAGTT TCGCTCTCCG 
    CGTGACTCCG ATGGACATGG GACTCACACA GCTTCAATCT CCGCCGGCCG 
    TTACGTTTTT CCGGCGTCAA CTCTCGGCTA CGCTCACGGC GTCGCTGCTG 
    GGATGGCTCC AAAAGCTAGA CTCGCCGCTT ACAAAGTCTG TTGGAACTCC 
    GGTTGTTACG ACTCCGATAT CTTAGCCGCT TTCGACACCG CCGTTGCCGA 
    CGGTGTCGAT GTCATCTCTC TCTCCGTTGG AGGCGTCGTG GTTCCTTATT 
    ACCTAGACGC TATCGCTATT GGAGCTTTTG GAGCTATTGA CAGAGGCATA 
    TTCGTCTCTG CTTCCGCCGG TAACGGAGGT CCCGGTGCTT TAACGGTGAC 
    AAATGTTGCT CCGTGGATGA CAACAGTCGG AGCTGGAACA ATCGATAGGG 
    ATTTTCCGGC CAATGTGAAA CTCGGTAACG GGAAGATGAT TTCTGGTGTT 
    AGTGTATACG GTGGACCGGG TCTGGATCCG GGTCGAATGT ACCCGCTTGT 
    TTACGGTGGT AGTTTACTAG GCGGCGATGG TTACTCATCG TCTCTGTGTC 
    TTGAAGGCTC GTTGGATCCG AATTTAGTGA AGGGAAAGAT CGTTCTTTGT 
    GATAGAGGAA TCAATTCTAG AGCAACCAAA GGTGAGATCG TACGGAAAAA 
    TGGAGGCTTG GGGATGATTA TAGCGAATGG TGTGTTTGAC GGTGAAGGTT 
    TAGTAGCTGA TTGCCACGTG TTACCGGCGA CATCTGTTGG TGCTTCTGGA 
    GGAGATGAGA TTCGTAGGTA TATCTCTGAA TCATCCAAAT CTCGTTCATC 
    GAAACATCCA ACGGCTACGA TTGTTTTCAA AGGTACCCGA CTTGGGATCC 
    GACCTGCACC GGTTGTTGCA TCTTTCTCTG CTCGTGGTCC TAATCCAGAG 
    ACGCCGGAGA TTCTTAAACC GGATGTAATC GCACCTGGTT TGAATATTCT 
    AGCTGCTTGG CCTGACCGGA TTGGTCCATC TGGTGTTACT TCTGATAACC 
    GGAGAACTGA GTTCAACATT TTATCAGGCA CTTCGATGGC GTGCCCGCAC 
    GTGTCTGGTC TAGCTGCTTT GCTTAAGGCG GCTCATCCGG ATTGGAGTCC 
    GGCGGCGATA AGATCAGCAT TGATAACCAC GGCTTACACG GTTGATAACA 
    GCGGTGAGCC GATGATGGAT GAGTCCACTG GCAATACATC TTCGGTTATG 
    GATTATGGTT CGGGTCATGT TCACCCAACC AAAGCTATGG ATCCGGGATT 
    AGTCTATGAT ATAACATCTT ATGATTATAT CAACTTCTTG TGTAATTCTA 
    ACTACACTAG AACCAACATT GTGACAATAA CCCGTCGCCA AGCGGACTGT 
    GACGGTGCAA GACGAGCGGG ACACGTCGGG AATTTAAACT ACCCGTCGTT 
    CTCTGTCGTG TTTCAGCAGT ATGGAGAGAG TAAAATGTCG ACACATTTCA 
    TTAGGACTGT GACAAATGTA GGCGATTCGG ATTCGGTTTA CGAGATTAAG 
    ATTAGGCCGC CTAGAGGGAC TACGGTGACG GTTGAGCCGG AGAAGCTATC 
    GTTCAGACGG GTGGGGCAGA AACTGAGTTT TGTTGTTAGG GTTAAGACCA 
    CAGAGGTGAA GTTGTCACCA GGAGCGACAA ATGTGGAGAC TGGTCATATA 
    GTTTGGTCAG ATGGGAAACG GAATGTGACA AGTCCCTTGG TGGTCACTCT 
    TCAACAACCT CTTTGAAGGG GTTTAGGATC TGGTGACCGG GAAAATTCTG 
    GTCTCTGTTT GTTGTACTAG TGAAAAAGAA AGATCATAAG TTGTTGTTGT 
    TGTCGTCTAT GATCTTTGTT GGTGTAATAT AAATATGTAT CTTTTGTTTT 
    GTTGTTAGGA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G14240.1 [+] show detail - Subtilase family protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peptidase S8/S53, subtilisin, active site 0
    HMMPanther SUBTILISIN-LIKE PROTEASE (PLANT) 0
    HMMPanther Peptidase S8, subtilisin-related 0
    HMMPfam Peptidase S8/S53, subtilisin/kexin/sedolisin 5e-31
    HMMPfam Proteinase inhibitor I9, subtilisin propeptide 3e-17
    HMMPfam Protease-associated PA 4.9e-15
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 8e-16
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 8e-16
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 8e-16
    Gene3D Peptidase S8/S53, subtilisin/kexin/sedolisin 1e-75
    superfamily Peptidase S8/S53, subtilisin/kexin/sedolisin 1.1e-82
    superfamily Proteinase inhibitor, propeptide 2.9e-08
    superfamily Transferrin receptor ectodomain, apical domai 6.6e-07

    See the detailed result >

    AT3G14240.1

    Model type
    Protein coding
    Short Description
    Subtilase family protein
    Computational Description
    Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilisin-like serine protease 2 (TAIR:AT4G34980.1); Has 8878 Blast hits to 7637 proteins in 1214 species: Archae - 263; Bacteria - 5045; Metazoa - 160; Fungi - 690; Plants - 1978; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR