F16025

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16025

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16025

Determination of introduced cDNA(s)

  • RAFL09-15-B12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-B12 - Resource: pda01996

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-15-B12 - full reading
    ATCAACAATA ATAGAAAAAG CCCTAACTTT CTCCGTCGAT GGCTTTCTTC 
    TCCTACTTTT TCTTCCTCTT GACTCTTTCT TCTCCTTCTT CTTCTGCTTC
    CTCTTCAAAC TCCTTGACTT ACATCGTCCA CGTCGACCAC GAAGCTAAAC
    CCTCAATCTT CCCCACTCAT TTTCACTGGT ACACTTCCTC TCTTGCCTCA
    CTCACCTCTT CTCCTCCCTC CATTATCCAC ACATACGACA CCGTTTTCCA
    TGGCTTCTCC GCTAGACTCA CTTCACAAGA CGCTAGTCAA CTCTTAGACC
    ATCCTCATGT CATCTCTGTT ATCCCGGAAC AAGTCCGTCA CTTGCACACC
    ACTCGTTCCC CTGAGTTTCT TGGTCTTAGG TCCACCGACA AAGCGGGTCT
    ACTCGAAGAG TCTGATTTCG GGTCGGATCT AGTTATCGGA GTTATCGATA
    CTGGTGTTTG GCCCGAAAGA CCTAGCTTTG ATGACCGTGG TCTTGGTCCT
    GTTCCCATTA AATGGAAAGG CCAATGTATC GCTTCCCAAG ATTTTCCGGA
    GTCTGCTTGT AACCGTAAAC TCGTCGGAGC TAGATTCTTC TGCGGTGGGT
    ATGAAGCAAC CAACGGGAAA ATGAATGAAA CGACTGAGTT TCGCTCTCCG
    CGTGACTCCG ATGGACATGG GACTCACACA GCTTCAATCT CCGCCGGCCG
    TTACGTTTTT CCGGCGTCAA CTCTCGGCTA CGCTCACGGC GTCGCTGCTG
    GGATGGCTCC AAAAGCTAGA CTCGCCGCTT ACAAAGTCTG TTGGAACTCC
    GGTTGTTACG ACTCCGATAT CTTAGCCGCT TTCGACACCG CCGTTGCCGA
    CGGTGTCGAT GTCATCTCTC TCTCCGTTGG AGGCGTCGTG GTTCCTTATT
    ACCTAGACGC TATCGCTATT GGAGCTTTTG GAGCTATTGA CAGAGGCATA
    TTCGTCTCTG CTTCCGCCGG TAACGGAGGT CCCGGTGCTT TAACGGTGAC
    AAATGTTGCT CCGTGGATGA CAACAGTCGG AGCTGGAACA ATCGATAGGG
    ATTTTCCGGC CAATGTGAAA CTCGGTAACG GGAAGATGAT TTCTGGTGTT
    AGTGTATACG GTGGACCGGG TCTGGATCCG GGTCGAATGT ACCCGCTTGT
    TTACGGTGGT AGTTTACTAG GCGGCGATGG TTACTCATCG TCTCTGTGTC
    TTGAAGGCTC GTTGGATCCG AATTTAGTGA AGGGAAAGAT CGTTCTTTGT
    GATAGAGGAA TCAATTCTAG AGCAACCAAA GGTGAGATCG TACGGAAAAA
    TGGAGGCTTG GGGATGATTA TAGCGAATGG TGTGTTTGAC GGTGAAGGTT
    TAGTAGCTGA TTGCCACGTG TTACCGGCGA CATCTGTTGG TGCTTCTGGA
    GGAGATGAGA TTCGTAGGTA TATCTCTGAA TCATCCAAAT CTCGTTCATC
    GAAACATCCA ACGGCTACGA TTGTTTTCAA AGGTACCCGA CTTGGGATCC
    GACCTGCACC GGTTGTTGCA TCTTTCTCTG CTCGTGGTCC TAATCCAGAG
    ACGCCGGAGA TTCTTAAACC GGATGTAATC GCACCTGGTT TGAATATTCT
    AGCTGCTTGG CCTGACCGGA TTGGTCCATC TGGTGTTACT TCTGATAACC
    GGAGAACTGA GTTCAACATT TTATCAGGCA CTTCGATGGC GTGCCCGCAC
    GTGTCTGGTC TAGCTGCTTT GCTTAAGGCG GCTCATCCGG ATTGGAGTCC
    GGCGGCGATA AGATCAGCAT TGATAACCAC GGCTTACACG GTTGATAACA
    GCGGTGAGCC GATGATGGAT GAGTCCACTG GCAATACATC TTCGGTTATG
    GATTATGGTT CGGGTCATGT TCACCCAACC AAAGCTATGG ATCCGGGATT
    AGTCTATGAT ATAACATCTT ATGATTATAT CAACTTCTTG TGTAATTCTA
    ACTACACTAG AACCAACATT GTGACAATAA CCCGTCGCCA AGCGGACTGT
    GACGGTGCAA GACGAGCGGG ACACGTCGGG AATTTAAACT ACCCGTCGTT
    CTCTGTCGTG TTTCAGCAGT ATGGAGAGAG TAAAATGTCG ACACATTTCA
    TTAGGACTGT GACAAATGTA GGCGATTCGG ATTCGGTTTA CGAGATTAAG
    ATTAGGCCGC CTAGAGGGAC TACGGTGACG GTTGAGCCGG AGAAGCTATC
    GTTCAGACGG GTGGGGCAGA AACTGAGTTT TGTTGTTAGG GTTAAGACCA
    CAGAGGTGAA GTTGTCACCA GGAGCGACAA ATGTGGAGAC TGGTCATATA
    GTTTGGTCAG ATGGGAAACG GAATGTGACA AGTCCCTTGG TGGTCACTCT
    TCAACAACCT CTTTGAAGGG GTTTAGGATC TGGTGACCGG GAAAATTCTG
    GTCTCTGTTT GTTGTACTAG TGAAAAAGAA AGATCATAAG TTGTTGTTGT
    TGTCGTCTAT GATCTTTGTT GGTGTAATAT AAATATGTAT CTTTTGTTTT
    GTTGTTAGGA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G14240.1 [+] show detail - Subtilase family protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peptidase S8/S53, subtilisin, active site 0
    HMMPanther SUBTILISIN-LIKE PROTEASE (PLANT) 0
    HMMPanther Peptidase S8, subtilisin-related 0
    HMMPfam Peptidase S8/S53, subtilisin/kexin/sedolisin 5e-31
    HMMPfam Proteinase inhibitor I9, subtilisin propeptide 3e-17
    HMMPfam Protease-associated PA 0.0000000000000049
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 8e-16
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 8e-16
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 8e-16
    Gene3D Peptidase S8/S53, subtilisin/kexin/sedolisin 1e-75
    superfamily Peptidase S8/S53, subtilisin/kexin/sedolisin 1.1e-82
    superfamily Proteinase inhibitor, propeptide 0.000000029
    superfamily Transferrin receptor ectodomain, apical domai 0.00000066

    See the detailed result >

    AT3G14240.1

    Model type
    Protein coding
    Short Description
    Subtilase family protein
    Computational Description
    Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilisin-like serine protease 2 (TAIR:AT4G34980.1); Has 8878 Blast hits to 7637 proteins in 1214 species: Archae - 263; Bacteria - 5045; Metazoa - 160; Fungi - 690; Plants - 1978; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR