F16038

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16038

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16038

Determination of introduced cDNA(s)

  • RAFL04-13-D06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-D06 - Resource: pda00516

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-13-D06 - full reading 
    ACGCACTGCG CCGCCAAAAA ACCCTTCTTT AAACCCTTTC CTCCTCGCGC 
    CGTCATGCAA GCCACCATCT TCTCTCCACG CGCCACTCTC TTCCCCTGTA 
    AACCTCTCCT CCCTTCCCAC AATGTCAACT CTCGCCGTCC CTCAATCATC 
    TCCTGCTCCG CCCAATCCGT AACCGCTGAT CCTTCACCAC CTATCACTGA 
    CACCAATAAG CTCAACAAAT ACAGCTCAAG AATCACTGAA CCCAAATCCC 
    AAGGTGGGTC TCAAGCAATT CTTCACGGTG TTGGTTTATC AGACGACGAT 
    TTGCTAAAAC CCCAGATTGG TATCTCGTCG GTTTGGTATG AAGGGAACAC 
    TTGTAACATG CATTTGCTGA AATTGTCTGA GGCTGTGAAA GAAGGAGTTG 
    AAAATGCAGG AATGGTTGGG TTTAGGTTTA ATACTATTGG TGTGAGTGAT 
    GCTATTTCGA TGGGAACGAG AGGGATGTGT TTTAGTTTGC AATCTAGGGA 
    TTTGATTGCT GATAGTATTG AGACTGTTAT GAGTGCTCAG TGGTATGATG 
    GTAACATATC TATTCCCGGT TGTGATAAAA ATATGCCTGG AACTATTATG 
    GCTATGGGAA GGCTTAACAG ACCAGGGATT ATGGTTTATG GTGGAACCAT 
    TAAGCCTGGC CATTTTCAAG ACAAGACATA TGACATTGTA TCTGCTTTCC 
    AGAGTTATGG AGAATTTGTT AGTGGCTCCA TAAGTGATGA ACAGAGAAAG 
    ACTGTCCTCC ATCATTCATG TCCTGGAGCT GGAGCCTGTG GTGGCATGTA 
    CACAGCGAAT ACAATGGCTT CTGCTATCGG AGCAATGGGA ATGTCCCTTC 
    CTTACAGTTC TTCAATACCT GCTGAAGACC CATTGAAGTT GGACGAGTGT 
    CGCTTAGCAG GAAAATATCT TCTAGAATTG CTAAAGATGG ACTTAAAACC 
    CCGTGACATT ATCACTCCAA AATCACTTCG TAATGCAATG GTTTCCGTCA 
    TGGCCCTTGG GGGATCGACA AATGCAGTAT TGCATCTAAT TGCTATTGCA 
    AGGTCTGTTG GTTTGGAGTT GACTCTTGAC GATTTTCAGA AAGTTAGCGA 
    TGCGGTTCCA TTTCTAGCAG ATCTTAAACC CAGTGGGAAG TATGTTATGG 
    AGGATATACA TAAGATAGGT GGTACGCCAG CTGTTCTCCG CTATTTATTA 
    GAGCTAGGAT TGATGGATGG TGATTGTATG ACAGTGACAG GGCAGACTTT 
    GGCTCAAAAT TTAGAAAACG TCCCAAGCTT AACAGAAGGG CAGGAGATAA 
    TTAGACCTCT GTCAAATCCA ATCAAGGAGA CTGGACACAT ACAAATTTTG 
    AGAGGAGACC TTGCACCAGA TGGTTCTGTA GCAAAAATTA CCGGCAAAGA 
    GGGCTTATAT TTCTCTGGTC CTGCACTTGT ATTTGAAGGA GAGGAATCTA 
    TGTTGGCTGC TATATCAGCA GACCCAATGA GTTTTAAGGG AACTGTGGTT 
    GTTATCAGAG GAGAGGGGCC TAAAGGAGGT CCAGGTATGC CTGAGATGTT 
    GACACCGACA AGTGCAATAA TGGGTGCCGG TCTTGGAAAG GAATGTGCAT 
    TACTGACTGA TGGTAGGTTC TCTGGTGGGT CACACGGTTT TGTTGTTGGC 
    CACATTTGCC CTGAAGCTCA GGAGGGTGGT CCGATCGGTC TGATCAAGAA 
    CGGAGACATA ATCACCATTG ACATAGGAAA GAAGAGAATA GACACACAAG 
    TCTCACCCGA AGAAATGAAT GACCGTAGAA AGAAATGGAC TGCTCCTGCA 
    TACAAGGTTA ACCGCGGAGT CCTATATAAG TACATCAAGA ACGTGCAATC 
    GGCTTCAGAT GGATGTGTGA CTGACGAGTA AAGTGAACGA TCTAAGAGAG 
    AGTTTTGTGA ATGAGCAGCA GAATGTAGTG TACGTTCATG AGGGAATTTG 
    TAAGTTTATT TATTGTAGCT TCTAGATCAT GTTACTTTGT GACTGATCAT 
    TAGCTATTTG CAGGGTTCGT TTTTAAGATT TTGTTTCTCT TAAATGTCAA 
    AATAAAAACT TGTGATTGTG GCCGAATTCC AAAGAATATA AAGACAGAAT 
    AAAGACGGAT TTGCACAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G23940.1 [+] show detail - dehydratase family
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site 0
    PatternScan Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site 0
    HMMPfam Dihydroxy-acid/6-phosphogluconate dehydratase 1.4e-210
    HMMTigr Dihydroxy-acid dehydratase 3.2e-297
    HAMAP Dihydroxy-acid dehydratase 40.986
    HMMPanther Dihydroxy-acid/6-phosphogluconate dehydratase 1.9e-264

    See the detailed result >

    AT3G23940.1

    Model type
    Protein coding
    Short Description
    dehydratase family
    Computational Description
    dehydratase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: pollen development; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroxy-acid dehydratase (InterPro:IPR004404), Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site (InterPro:IPR020558), Dihydroxy-acid/6-phosphogluconate dehydratase (InterPro:IPR000581); Has 13943 Blast hits to 13934 proteins in 2322 species: Archae - 210; Bacteria - 7441; Metazoa - 5; Fungi - 304; Plants - 157; Viruses - 0; Other Eukaryotes - 5826 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR