F16043

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16043

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16043

Determination of introduced cDNA(s)

  • RAFL16-78-O20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-78-O20 - Resource: pda10266

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-78-O20 - full reading 
    AATTTCCTTA CTCTTCTTCA CTTCCGCCAT AGCTGAAACC TTCAAAAACC 
    TCGATTCTCA TCCACAGTTC CCTTGTAAAC CTCCTCATTT TAGCTCTTAT 
    CCCTTCTGCA ATGTCTCTTT ATCCATAAAA CAACGAGCAA TTTCTCTCGT 
    CTCCCTCCTC ATGCTCCCAG AGAAGATAGG TCAGCTCTCA AACACAGCTG 
    CTTCAGTACC CCGTCTCGGT ATTCCTCCGT ACGAGTGGTG GTCGGAGTCT 
    TTACACGGAC TCGCCGATAA CGGTCCCGGA GTTTCCTTCA ACGGTTCGAT 
    CTCCGCCGCT ACTAGTTTTC CTCAGGTAAT CGTATCTGCT GCATCTTTCA 
    ATAGAACGCT ATGGTACGAG ATTGGATCTG CTGTTGCGGT GGAAGGTCGG 
    GCTATGTACA ACGGTGGTCA AGCTGGGTTG ACGTTTTGGG CTCCGAATAT 
    AAATGTGTTT AGGGATCCGA GATGGGGAAG AGGACAGGAG ACTCCTGGTG 
    AGGATCCGAA GGTAGTTTCC GAGTATGGAG TTGAGTTCGT TAGAGGGTTT 
    CAAGAGAAGA AGAAAAGGAA GGTTTTGAAA AGAAGATTTA GTGATGATGT 
    TGATGATGAT CGTCATGATG ATGATGCTGA TGGGAAGCTC ATGTTATCTG 
    CTTGTTGTAA GCATTTCACT GCCTATGATT TGGAAAAATG GGGGAATTTC 
    ACTAGATACG ACTTCAATGC TGTGGTCACA GAACAGGACA TGGAAGACAC 
    ATATCAGCCC CCATTTGAGA CTTGTATAAG AGATGGTAAA GCTAGCTGCT 
    TGATGTGTTC ATATAATGCA GTTAATGGGG TCCCTGCTTG TGCGCAAGGA 
    GACTTATTAC AAAAAGCTCG AGTTGAGTGG GGATTTGAAG GGTACATTAC 
    ATCAGACTGT GATGCTGTGG CAACTATTTT TGCGTACCAA GGATATACCA 
    AGTCACCTGA GGAAGCTGTT GCTGATGCCA TAAAAGCAGG GGTGGATATA 
    AATTGTGGAA CATACATGCT TCGGCACACA CAATCTGCGA TTGAGCAGGG 
    GAAGGTGAGC GAAGAACTAG TAGACCGAGC TCTGCTAAAT CTCTTTGCTG 
    TTCAACTTCG TCTTGGACTT TTTGATGGTG ATCCAAGAAG AGGACAGTAC 
    GGAAAGTTAG GATCAAATGA CATTTGTAGC TCAGACCACA GAAAATTGGC 
    ACTGGAAGCA ACAAGACAGG GTATCGTGCT CCTGAAAAAT GATCACAAGT 
    TGTTGCCTTT GAACAAAAAC CATGTTTCTT CATTAGCAAT CGTTGGTCCA 
    ATGGCGAATA ATATAAGCAA TATGGGCGGT ACTTATACAG GAAAGCCGTG 
    TCAACGAAAG ACTTTGTTCA CGGAACTTCT GGAGTATGTG AAGAAGACAT 
    CTTATGCGTC TGGTTGCTCA GACGTGTCTT GTGATTCTGA TACCGGATTT 
    GGAGAAGCTG TGGCCATCGC CAAGGGAGCG GATTTTGTCA TAGTAGTTGC 
    AGGATTAGAT CTCTCTCAAG AAACCGAGGA TAAGGATCGA GTTAGTCTTT 
    CTTTGCCTGG TAAACAGAAA GATCTTGTGT CTCATGTTGC TGCTGTGAGC 
    AAAAAACCGG TGATTCTTGT TCTAACCGGT GGAGGACCAG TGGATGTAAC 
    GTTTGCTAAA AATGACCCGA GAATCGGAAG CATTATCTGG ATTGGTTATC 
    CAGGTGAAAC TGGTGGACAA GCACTCGCTG AAATCATATT TGGAGACTTC 
    AATCCAGGTG GTAGATTACC GACAACGTGG TATCCGGAGT CATTCACGGA 
    TGTGGCAATG TCGGATATGC ACATGAGAGC CAATTCATCT CGTGGATATC 
    CAGGAAGAAC GTACAGATTC TATACCGGAC CTCAAGTTTA CAGTTTTGGG 
    ACCGGTTTAA GCTACACGAA ATTCGAGTAC AAGATCTTAT CAGCACCAAT 
    CAGACTTAGC TTATCGGAAC TTCTTCCACA ACAGTCTTCT CACAAGAAAC 
    AACTACAACA TGGAGAAGAA CTTCGATACT TACAGCTCGA TGATGTGATT 
    GTTAACTCTT GCGAATCTCT GCGGTTTAAC GTTCGTGTTC ATGTGAGCAA 
    TACCGGAGAA ATCGACGGTA GTCATGTTGT GATGCTGTTT TCGAAAATGC 
    CACCGGTTTT ATCTGGTGTT CCGGAGAAGC AGCTGATTGG TTATGATCGT 
    GTTCATGTTC GTTCCAATGA AATGATGGAA ACAGTGTTCG TAATCGATCC 
    TTGCAAGCAG CTAAGCGTAG CGAATGATGT CGGGAAGAGA GTGATTCCTC 
    TGGGGAGTCA TGTCTTGTTC TTGGGAGATT TACAACATTC TCTCTCTGTT 
    GAATTCTAAA ACACTGTAAT CCGAAAAAAT TTCATTACTG TTTATTTCCT 
    TCTAGAATGA TCTATATATA TACTTTTGAA ACT

    Gene models with high sequence identity

    1. AT5G10560.1 [+] show detail - Glycosyl hydrolase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 9.3e-94
    superfamily Glycoside hydrolase, family 3, C-terminal 3e-29
    HMMPfam Glycoside hydrolase, family 3, N-terminal 2.7e-53
    HMMPfam Glycoside hydrolase, family 3, C-terminal 4.4e-51
    Gene3D Glycoside hydrolase, family 3, N-terminal 2.1e-80
    Gene3D no description 2.6e-48

    See the detailed result >

    AT5G10560.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase family protein
    Computational Description
    Glycosyl hydrolase family protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT1G78060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR