F16049

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16049

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16049

Determination of introduced cDNA(s)

  • RAFL03-05-A01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-05-A01 - Resource: pda00171

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-05-A01 - full reading 
    ACATACGCGG AAAAAAAAAA AAAAAGCGAA TCGTTTACTT ACCCCTCTTT 
    GAAACCGACG GTGGTATTTT TCGCCGGAGA AGATGAAGCA GAGAACCTGG 
    CCTTGTAGAT CTGAAGGATC TCGATTCTCC TCCTTATCGT TTTTGAAACC 
    TCACGACAAG GATAAACGGA GTAGAATTTC ATCAATCAAC AAAGCAACGG 
    CGAAGTCAAC CACAAGTTCA AGGTCTTCTT CTTCCTCTTC TTCTTCACGT 
    CCTCCATCGA ATGAGTTCGG AGATTTCTCG ATGCTTCCGT ATGATATACT 
    GATGAAGATT GCTGCACCGT TTAGTCATCC GAATCTTCAA GCGGCGTCTT 
    TGGTATGTAA ATCGTGGAGA GACGCGCTAA AGCCGTTGCG AGAGTCGATG 
    TTGTTGATTC GGTGGGGGAA AAAGTACAAG CACGGAAGAG GAGGTGTGCG 
    AGCGAATCTC GACAAAGCTC TTGATTCGTT TCTGAAAGGA GCTATGCGTG 
    GATCCACGCT CGCTATGGTC GACGCTGGGC TTGTGTATTG GGAAAGAGGA 
    GAGAAGGAGA AAGCGGTGAA TTTGTATCGG AGAGCTTCGG AGCTTGGTGA 
    TGCTGTTGGT CAATGTAATT TAGGGATTGC TTATCTTCAA GTTCAACCTT 
    CAAATCCCAA GGAAGCGATG AAATGGTTGA AACAATCTGC AGAGAATGGT 
    TATGTTCGAG CACAGTATCA GTTAGCTCTT TGTTTACACC ATGGTCGGGT 
    CGTGCAAACC AATCTGCTTG AAGCTACTAA ATGGTACCTA AAGGCAGCAG 
    AAGGTGGGTA TGTACGAGCG ATGTATAACA TTTCGCTTTG TTATTCGGTT 
    GGAGAAGGCT TACCACAAAA CCGCAAGCTA GCAAGAAAAT GGATGAAACG 
    AGCAGCTGAT CACGGCCACA GTAAAGCTCA GTTTGAACAC GGCCTTGCTC 
    TATTTTCTGA AGGGGAGATG CTGAAGTCAG TGCTTTACTT AGAACTTGCC 
    GAACGTGGTG GCGAAGCAGC TGCTACTCCC GTCAAAGAAG TTGTACACCA 
    ACAGCTTTCT GCAACTTTTG GTGGTCAGGC CGTACACCAT GCCATACACC 
    AAGCCAATAA CTGGCGTCCT CTACCAGTTA CTCGATGACT CCTATCATTT 
    ATTTCAGTGA GGTCTAGTGA TTGGCTAGTT ACATGTCCAT AACTTAAATT 
    CCAATTTGAC AATGTATCAA TGACAAAACC TTATTTCAGA TTTCTACTTT 
    TAGTTCGTAC T

    Gene models with high sequence identity

    1. AT1G70590.1 [+] show detail - F-box family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SEL-1-LIKE PROTEIN-RELATED 2.4e-274
    HMMPanther SEL-1-LIKE PROTEIN 2.4e-274
    Gene3D Tetratricopeptide-like helical 7.2e-42
    HMMSmart Sel1-like 0.21
    HMMSmart Sel1-like 6.9
    HMMSmart Sel1-like 1.2e-05
    HMMSmart Sel1-like 8.4e-07
    HMMSmart Sel1-like 1.7e-08
    ProfileScan Tetratricopeptide repeat-containing 8.654
    HMMPfam Sel1-like 2
    HMMPfam Sel1-like 0.094
    HMMPfam Sel1-like 0.00048
    HMMPfam Sel1-like 5e-08
    HMMPfam Sel1-like 5.3e-09
    HMMPfam F-box domain, cyclin-like 8e-06
    superfamily HCP-like 6e-35
    superfamily F-box domain, Skp2-like 2.3e-06

    See the detailed result >

    AT1G70590.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 16059 Blast hits to 6577 proteins in 1289 species: Archae - 0; Bacteria - 11525; Metazoa - 502; Fungi - 723; Plants - 391; Viruses - 15; Other Eukaryotes - 2903 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR