F16114

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16114

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • increased width (PATO:0000600)
    (Cauline leaf::Shape::wide)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16114

Determination of introduced cDNA(s)

  • RAFL04-16-G19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-G19 - Resource: pda02323

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-G19 - full reading 
    AAAAACTTTC AGTCAAATCT TGAGAACAGA AAGAAAGTCC ACGCGAGGAC 
    ATAAGCGCGT GTGATTTAAA ATCGTCGTCG TCGTCTTCCA CACCGACTTT 
    AATCTGATTC TTAGAATCGC CGTTTGGTTT TTAACCAGAG AGATTATCTA 
    CCAAGGAACG ATGATTATTG AAAGAGCTCG AGTTCCGTTG AGCCGATGGC 
    AACAAGCGGC CGTGGCGATG GGATCTGCTC TCGGTGCGTT GGTTGATCCT 
    CGTAGAGCGG ATCTAATCGC TGCTCTCGGC GAAACTACCG GTAAACCAGC 
    TTTTGAAATG GTTCTTGAGA GAATGAAGAA GAGCGAAGAA GGAAGAGCTA 
    TATTATTGGA GCGTCCTCGA GTTGTGTCAG AGCAAGTAGG TCATGCTTGG 
    GATCTACCAG AAAACACATT TGGAGCTGCA TATGCTAAAT TCATGGGATC 
    TAGAAACTTC TCTCCCGATG ATCGTCCGCC CGTAAGATTC ATGGAGACGG 
    ATGAATTGGC TTACGTAGCG ACACGGGCAC GCGAAGTTCA CGACTTATGG 
    CACACTCTGT TTGGCCTTCC TACGAATCTT ATCGGCGAGT CGTCTTTGAA 
    AGTTATCGAG TTTGAGCAAA TGTATCTTCC GATGTGTATG CTCTCTGTGA 
    TTGGAGGTAC TGTGAGGTTC AACGAGAAGC AAAGATCAAT GTTCTTGAAG 
    CATTACCTTC CTTGGGCTGT TCGTGCTGGA AGACAATGCA CTGACCTCAT 
    GTGTGTGTAC TATGAGCGTC ACTTTAGTGA AGACTTGGAG CAAGTTCGTA 
    GAAAATGGGG AATCATCCCT GCTCCTCAAC ATCCTAAATG ACGGTTCTAG 
    TTTAATCTGT TTTCGAATCA CTTAGTTATG CCAAATCTCT TATAAATGTG 
    TAGTGGATTG GATTAAAAGT TGTACTCGCA TTTGATGGTT AATAAGAGAC 
    AAGTTGG

    Gene models with high sequence identity

    1. AT2G03690.1 [+] show detail - coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Coenzyme Q biosynthesis Coq4 1.7e-89
    HMMPanther UBIQUINONE BIOSYNTHESIS PROTEIN 7.7e-59

    See the detailed result >

    AT2G03690.1

    Model type
    Protein coding
    Short Description
    coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein
    Curator Summary
    Ubiquinone biosynthesis protein COQ4 homolog.
    Computational Description
    coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme Q biosynthesis Coq4 (InterPro:IPR007715); Has 675 Blast hits to 675 proteins in 251 species: Archae - 0; Bacteria - 141; Metazoa - 162; Fungi - 176; Plants - 60; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR