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F16133_77

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16133_77

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16133_77

Determination of introduced cDNA(s)

  • RAFL04-20-F22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-F22 - Resource: pda02382

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-F22 - full reading 
    ACCACCACAG GCTCATTGAC AGAAAGAGAG TGGGAGAGAG ACATGACGGG 
    CTGTGTGAAT TCTATTTCTC CGCCGCCGGT GACTTTATAC CGGCATCGTG 
    CCTCTCCGTC ACGATCGTCC TTCTCATTAT CCGGCGATGC CTTACACTCT 
    CTTTACCGGC ACCGACGTGT ATCAAGATCT CCGTCGATTA TCGCTCCCAA 
    ATTTCAGATT GTGGCGGCTG AAAAATCGGA GCCTCTGAAA ATTATGATAT 
    CAGGAGCTCC TGCTTCTGGT AAAGGTACAC AATGCGAGCT GATTACTCAC 
    AAATATGGTT TGGTGCATAT CTCTGCTGGA GATTTGCTGA GGGCTGAAAT 
    CGCTTCTGGA AGTGAAAATG GAAGACGTGC TAAAGAACAT ATGGAGAAAG 
    GACAATTGGT CCCTGATGAA ATAGTTGTAA TGATGGTAAA AGATCGTTTA 
    TCACAGACAG ATTCAGAGCA AAAAGGATGG CTTTTGGATG GATATCCAAG 
    GAGTGCATCA CAGGCAACAG CTCTCAAGGG ATTTGGATTC CAGCCTGATC 
    TATTCATTGT CCTCGAAGTT CCTGAAGAAA TTCTAATTGA AAGAGTTGTT 
    GGGCGTCGAT TGGATCCTGT CACAGGAAAG ATCTACCACT TGAAGTATTC 
    GCCTCCAGAG ACAGAAGAGA TTGCTGTTAG ACTCACCCAA CGTTTTGATG 
    ATACCGAAGA GAAGGCAAAA CTGCGGCTGA AGACTCATAA CCAAAATGTG 
    AGTGATGTGC TTTCTATGTA CGACGATATA ACAATTAAGA TCGAGGGAAA 
    CCGCTCAAAA GAGGAAGTGT TTGCCCAGAT CGATTCTTCT CTGTCCGAAT 
    TGCTTCAAGA GAGGAACACT GCTCCAAGTT CACTTTTAAG TTGATTCGTT 
    CTTGGTACAA ACCTGATGAA GTGCTTACCC AGATCGACAC TACTATGTCC 
    AAATTGCTTC AACAGAGGAA CTCTGCTTCA AGTTCACTTG TAAGTTGAAT 
    CATTCTTAGC AAGGACCTAA CCAGCGGTAA ATATCCTTTC TTGCATTTAT 
    CACACTCGAT TGATATCTCT TGTATCGCAA TAACGGGTTG TTTTGTCGCC 
    AGTAAGACAA TGTACCTCAC ACCTCAGAAA TATGCAGACC TTCTTCTTAT 
    T

    Gene models with high sequence identity

    1. AT5G47840.1 [+] show detail - adenosine monophosphate kinase
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Adenylate kinase 0
    HMMTigr Adenylate kinase, subfamily 2.2e-85
    superfamily P-loop containing nucleoside triphosphate hyd 1.3e-52
    superfamily Adenylate kinase, active site lid domain 0.0000000047
    HMMPanther ADENYLATE KINASE 9.4e-99
    HMMPanther Adenylate kinase 9.4e-99
    HMMPfam Adenylate kinase 2e-48
    Gene3D no description 1.8e-65
    FPrintScan Adenylate kinase 7.3e-22
    FPrintScan Adenylate kinase 7.3e-22
    FPrintScan Adenylate kinase 7.3e-22
    FPrintScan Adenylate kinase 7.3e-22
    HAMAP Adenylate kinase 27.136

    See the detailed result >

    AT5G47840.1

    Model type
    Protein coding
    Short Description
    adenosine monophosphate kinase
    Computational Description
    adenosine monophosphate kinase (AMK2); FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenylate kinase family protein (TAIR:AT5G35170.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR