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F16136_76

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16136_76

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16136_76

Determination of introduced cDNA(s)

  • RAFL09-90-P06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-90-P06 - Resource: pda06954

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-90-P06 - full reading 
    ACGACACTCG CAACTTCTTC CTTATCGACA CCTACACTCT CCTGCTACAA 
    TGGCGACTTT CCTAACAAAT GTTGTTTCAA TCAAACCTAC AATCTTCTCA 
    TTCCAGTCCG AATCCTTCAC TCCTTTGCAT ACACGGGTCA ATGTATTCTC 
    CTCGAAACCC TTTCCTTCTC TCGCTGGAAC TTTCTCCCGG AGCTCTAGAA 
    CGAGATTCAT TCCTTATGCT GTAACGGAGA CGGAAGAAAA ACCCGCCGCT 
    TTGGACCCTA GTTCAGAAGC TGCCAGGCGT GTGTATATCG GTAACATACC 
    CAGGACGGTG ACCAATGAGC AGCTCACTAA ACTTGTTGAA GAACACGGTG 
    CTGTTGAAAA AGTTCAGGTG ATGTATGATA AGTATTCAGG AAGAAGCCGT 
    CGATTTGGGT TTGCTACAAT GAAATCAGTT GAAGATGCTA ATGCTGTGGT 
    TGAGAAATTG AATGGCAATA CCGTTGAAGG GCGTGAGATA AAGGTTAACA 
    TTACAGAGAA ACCTATAGCA TCATCACCTG ATTTATCAGT TCTTCAGTCT 
    GAGGATTCAG CATTTGTAGA TAGCCCTTAC AAAGTGTATG TTGGGAATCT 
    AGCAAAGACT GTTACAAAAG AGATGCTTGA GAATTTGTTT TCTGAGAAAG 
    GGAAAGTAGT AAGTGCTAAG GTTTCAAGAG TACCTGGAAC TTCCAAATCC 
    ACCGGGTTTG GATTCGTTAC GTTTTCTTCT GAAGAAGATG TGGAAGCAGC 
    CATTGTTGCT CTTAACAATT CGTTGCTGGA AGGACAGAAG ATTCGGGTGA 
    ATAAGGCTTA GCCTATTGGA TCATAAAGAA TGTGAAAAGA ATCGCTTTGA 
    AGAGTTTTTG TAATGCAAAT CATTAGAGCT TAGTGTATCA TCTTGTATTC 
    ATTCTAAGTT GAAAATGAAA CCATATCTTT TCAAAAGCTT ATAGTTGTGG 
    TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT3G52150.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 9.1e-85
    HMMPanther RNA-BINDING PROTEIN 9.1e-85
    HMMPfam RNA recognition motif, RNP-1 1e-18
    HMMPfam RNA recognition motif, RNP-1 5.5e-21
    HMMSmart RNA recognition motif, RNP-1 4.7e-24
    HMMSmart RNA recognition motif, RNP-1 9.5e-26
    superfamily RNA-binding domain, RBD 4.8e-23
    superfamily RNA-binding domain, RBD 9.3e-23
    Gene3D Nucleotide-binding, alpha-beta plait 1.5e-21
    Gene3D Nucleotide-binding, alpha-beta plait 1.5e-23
    ProfileScan RNA recognition motif, RNP-1 18.308
    ProfileScan RNA recognition motif, RNP-1 18.973

    See the detailed result >

    AT3G52150.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 33 (TAIR:AT3G52380.1); Has 994423 Blast hits to 498842 proteins in 22080 species: Archae - 21562; Bacteria - 603611; Metazoa - 187119; Fungi - 27426; Plants - 59617; Viruses - 70898; Other Eukaryotes - 24190 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR