F16225

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16225

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16225

Determination of introduced cDNA(s)

  • RAFL04-19-L23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-L23 - Resource: pda00634

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-19-L23 - full reading 
    ATTTTTCATC GATTCGATTC CAAATCGGAA GGATGATAAC GTCGTCCCTA 
    ACCTCATCTC TGCAAGCTCT CAAGCTTTCG TCTCCGTTCG CCCATGGCTC 
    CACTCCTCTC TCATCTCTCT CTAAGCCCAA TTCCTTCCCG AACCACAGAA 
    TGCCCGCTTT AGTTCCGGTC ATCAGAGCCA TGAAAACGAT GCAGGGGCGC 
    GTGGTGTGCG CAACCAGTGA CAAGACTGTG GCGGTGGAGG TGGTGAGGCT 
    GGCTCCCCAC CCCAAGTACA AGAGGCGCGT GAGGATGAAG AAGAAGTACC 
    AAGCTCACGA CCCCGATAAT CAGTTCAAGG TTGGCGACGT GGTCAGACTG 
    GAAAAGAGCA GACCCATCAG TAAGACTAAA TCATTTGTGG CGCTTCCTGT 
    CATCGCAAGG GCCGCCAGGA AAGCCGAAGC CGGAGGAGAT GAACTCCTTG 
    GCCTTCCCTT GGAGTCTCAG CAGCCGGCGT AGAGAATGAT TGCTCTTTGT 
    TTCTTTTGGT AAAGCCGTCT TTTTTTTGCT CTGCTTCTGT TTGTTTGTTG 
    TGTATCCCGG AACCAGTGTA ATTTATGGAA TGCTTTTGTG ATTTCATTGC 
    TTATGCCATG AGTGTGTTTT CAAT

    Gene models with high sequence identity

    1. AT1G79850.1 [+] show detail - ribosomal protein S17
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Ribosomal protein S17 2e-27
    PatternScan Ribosomal protein S17, conserved site 0
    Gene3D Nucleic acid-binding, OB-fold 4.1e-24
    HMMPanther 30S RIBOSOMAL PROTEIN S17 2e-74
    HMMPanther Ribosomal protein S17 2e-74
    superfamily Nucleic acid-binding, OB-fold-like 4.6e-26
    FPrintScan Ribosomal protein S17 1.6e-09
    FPrintScan Ribosomal protein S17 1.6e-09
    FPrintScan Ribosomal protein S17 1.6e-09
    HMMPfam Ribosomal protein S17 5.2e-29

    See the detailed result >

    AT1G79850.1

    Model type
    Protein coding
    Short Description
    ribosomal protein S17
    Curator Summary
    nuclear-encoded 30S chloroplast ribosomal protein S17
    Computational Description
    ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR