F16232

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16232

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16232

Determination of introduced cDNA(s)

  • RAFL05-21-D22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-D22 - Resource: pda02811

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-D22 - full reading 
    TGACACACAA TCCAATCAAA ACACACAGAG AGAAGAAAAA CTCAGAAGAA 
    AAGCCAAAGA GTGAAACAAA AATGGCGTCG ACGACTCTCT CAATCGCAAC 
    AACAATCCGT TCCTCATCTT ATCCTACTCT CGCTTCCATC AATCACTTCC 
    CTTCCCGAAC CACCACCATC GAATTCCCCT CTCGCTTCGG TGGTGGTTCA 
    TCATCCACAT TGACCCACCG TGCAACCCAT CTCCGTCCAA TCGCCGCCGT 
    CGAAGCTCCG GAGAAAATCG AGAAGATCGG ATCCGAAATC TCATCCCTAA 
    CCCTCGAAGA AGCTCGTATC CTCGTCGACT ATCTCCAAGA CAAATTCGGT 
    GTCTCCCCAC TCTCTTTAGC CCCCGCAGCA GCGGCGGTTG CTGCTCCAGC 
    CGACGGTGGC GCGGCGGCTG TAGTGGAGGA GCAAACAGAG TTCGATGTGG 
    TTATCAATGA AGTTCCGAGT AGTTCTCGTA TTGCAGTAAT TAAAGCTGTT 
    AGGGCTTTGA CTAGCTTGGC GTTGAAGGAA GCTAAGGAGC TAATCGAAGG 
    ATTACCAAAG AAGTTTAAAG AAGGTATCAC TAAAGATGAA GCTGAAGAAG 
    CTAAGAAGAC TCTTGAAGAA GCTGGTGCTA AAGTCTCCAT TGCTTAAGGT 
    TTTTATAAAA AAAAAAAAAG AAGTTGTTAT CTTTTCTGGA ATTTGATTGG 
    TCTTTTGTGT TGTTTAGTAT AGTTTGCGTC TGGAATTGTT GAGAAATTGT 
    TGTAATTTGA ATCACATTTG GTTTCCCATT AGCTGATTTC GCCATTGATG 
    TGAGCTTTTT GGTAGCTGCA CATAACATGT TTGTTGAAAT GCCTAAATGA 
    GGCAAATCAC TCGTAGTTGC TTAACATGAA ACAGAGTTAA AAATAAAAAA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G27830.1 [+] show detail - ribosomal protein L12-A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L7/L12, C-terminal 2.3e-26
    HMMPanther Ribosomal protein L12, chloroplast 9.9e-90
    HMMPanther RIBOSOMAL PROTEIN L7/L12 9.9e-90
    BlastProDom Ribosomal protein L7/L12, C-terminal 4e-18
    HAMAP Ribosomal protein L7/L12 22.128
    superfamily Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 6.4e-22
    superfamily Ribosomal protein L7/L12, oligomerisation 0.00000000000073
    Gene3D Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 3.3e-21
    Coil coiled-coil 0
    HMMTigr Ribosomal protein L7/L12 1.2e-34

    See the detailed result >

    AT3G27830.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L12-A
    Curator Summary
    50S ribosomal protein L12-A
    Computational Description
    ribosomal protein L12-A (RPL12-A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12-C (TAIR:AT3G27850.1); Has 8536 Blast hits to 8536 proteins in 2747 species: Archae - 0; Bacteria - 5673; Metazoa - 193; Fungi - 128; Plants - 248; Viruses - 0; Other Eukaryotes - 2294 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR