F16248

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16248

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Other)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16248

Determination of introduced cDNA(s)

  • RAFL06-13-N02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-N02 - Resource: pda07565

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-13-N02 - full reading 
    AAAGTGAAAT GAAGTCAGCA ATTTCATCGT CACTCTTCTT CAATTCGAAG 
    AATCTTTTAA ACCCTAATCC TCTTTCTCGC TTCATTTCTC TCAAATCTAA 
    CTTCCTCCCT AAATTATCTC CGAGATCGAT CACTAGTCAC ACCTTGAAGC 
    TCCCATCTTC GTCAACCTCA GCTTTAAGAT CCATTTCCTC TTCCATGGCT 
    TCTTCTTTCA ACCCTGAACA AGCTAGAGTT CCCTCTGCTC TTCCTCTCCC 
    AGCTCCTCCG TTGACCAAAT TCAACATCGG ATTGTGTCAG CTATCTGTTA 
    CATCTGACAA AAAGAGAAAC ATCTCTCATG CTAAAAAAGC CATTGAAGAA 
    GCTGCTTCTA AAGGAGCTAA GCTTGTTCTC TTACCCGAAA TTTGGAACAG 
    TCCGTATTCC AATGATAGTT TTCCAGTTTA TGCGGAGGAG ATTGATGCAG 
    GTGGTGATGC TTCTCCTTCA ACGGCAATGC TTTCTGAAGT TTCCAAACGT 
    CTCAAGATTA CAATCATTGG TGGATCTATA CCAGAAAGAG TTGGAGATCG 
    TTTGTATAAC ACTTGCTGTG TCTTTGGTTC CGATGGAGAG CTAAAAGCTA 
    AGCATCGGAA GATACATTTA TTTGATATAG ACATTCCCGG GAAGATTACT 
    TTTATGGAAT CCAAAACTCT TACTGCTGGA GAGACACCAA CAATCGTTGA 
    CACAGATGTA GGGCGTATTG GAATAGGCAT CTGTTATGAT ATCAGGTTCC 
    AGGAGTTAGC TATGATATAT GCTGCAAGAG GGGCTCATTT GCTGTGCTAC 
    CCGGGAGCCT TTAACATGAC AACTGGACCA TTGCATTGGG AATTACTACA 
    AAGGGCCAGG GCTACGGATA ATCAGTTATA TGTGGCGACA TGCTCACCTG 
    CCAGAGATTC AGGAGCTGGC TACACTGCTT GGGGGCACTC AACACTCGTT 
    GGGCCTTTTG GAGAAGTACT AGCAACGACT GAGCATGAGG AGGCCATTAT 
    CATAGCAGAG ATTGATTACT CTATCCTTGA ACAACGAAGG ACTAGCCTTC 
    CATTGAATAG GCAGCGGCGG GGAGATCTTT ACCAGCTTGT AGACGTACAG 
    CGCTTAGACT CTAAATGAAC GCAGCAGTAA CTGTATATCT GAGAGATATT 
    GCGAGTTGAG CACGATTTGG TTACTTACAA CTTCATGCAT GATCAGTCAT 
    TTCTCCACAA CTTTGCTGAG ATATGTAAAA GAATAAAAAT CAAACTTTTG 
    AGTTAAAATC GAACAAAGGC AAGTAAATTC TGCTTAGATA ATGTGAACTC 
    CACCCACTTG CCATGTGTTT GTTGTTTATA AACTTCAATG CATTCTGATA 
    ACG

    Gene models with high sequence identity

    1. AT5G12040.1 [+] show detail - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NITRILASE-RELATED 2.5e-71
    ProfileScan Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 49.731
    Gene3D Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4.3e-83
    HMMPfam Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3.3e-32
    superfamily Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2.1e-84

    See the detailed result >

    AT5G12040.1

    Model type
    Protein coding
    Short Description
    Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
    Computational Description
    Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein; FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, zinc ion binding; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010); BEST Arabidopsis thaliana protein match is: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (TAIR:AT4G08790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR