F16318

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16318

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16318

Determination of introduced cDNA(s)

  • RAFL09-72-P15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-72-P15 - Resource: pda17819

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-72-P15 - full reading 
    GATGGGATTG CTGCAAACGG TTCCTTATAT GGCAGTGAAT TTAAATCTGA 
    TGATGCAATG GAAACAGATA CTACAGTTTT AAGAGACTTC GAAGGTGCAA 
    CAGCACTGTC TGCTAATGCT TCATTGGCTG AGCGTGCTAT TGAGCCTGCA 
    CTTGTCATGT TTGAGGTTCA TGTGCCACCA TCGTGCAGTC TTGATGGTGT 
    ACACTCACAA CATTTCTTTG GGACTGGCAT CATTATATAT CATTCTTCTA 
    ACATGGGGCT TGCTGTGGTG GACAAAAACA CAGTTGCGAT TTCTGCATCT 
    GATGTTATGT TGTCCTTTGC TGCTTTTCCA GTCGAGATTC CTGGAGAGGT 
    AGTATTTCTT CATCCCGTTC ACAACTATGC TCTGATTGCG TATAATCCAT 
    CAGCAATGGA TCCTGCCAGT GCTTCAGTCA TTCGTGCAGC TGAGCTACTA 
    CCTGAACCTG CACTCCAACG TGGAGATTCA GTCTATCTTG TCGGATTGAG 
    TAGGAACCTT CAAGCTACAT CAAGAAAATC TATTGTAACC AATCCATGTG 
    CAGCGTTAAA CATTGGTTCT GCTGATTCTC CCCGTTACAG AGCTACTAAT 
    ATGGAAGTAA TTGAGCTTGA TACAGATTTT GGTAGCTCAT TTTCAGGGGC 
    GCTGACTGAT GAGCAGGGAA GAATTCGGGC TATTTGGGGA AGTTTTTCGA 
    CTCAGGTTAA ATATAGTTCC ACTTCTTCAG AAGACCACCA GTTTGTCAGA 
    GGTATCCCAG TATATGCAAT CAGCCAAGTC CTTGAAAAAA TCATAACCGG 
    TGGAAATGGA CCAGCTCTTC TCATAAATGG TGTCAAAAGG CCAATGCCAC 
    TTGTTCGGAT TTTGGAAGTT GAATTGTATC CTACTTTGCT TTCAAAAGCC 
    CGGAGTTTTG GTCTGAGTGA TGAATGGATC CAAGTCCTAG TCAAGAAGGG 
    TCCTGTTAGA CGTCAAGTTC TGCGTGTTAA AGGTTGCCTG GCAGGATCAA 
    AAGCTGAAAA CCTTCTTGAA CAAGGCGATA TGGTTCTGGC AGTCAATAAG 
    ATGCCAGTTA CATGCTTCAA TGACATAGAA GCTGCTTGCC AAACATTGGA 
    TAAGGGTAGT TACAGCGATG AAAATCTCAA TCTAACAATC CTTAGACAGG 
    GCCAAGAACT GGAGCTCGTA GTTGGAACTG ATAAGAGAGA TGGGAATGGA 
    ACGACAAGAG TGATAAATTG GTGCGGATGC GTTGTTCAGG ATCCTCATCC 
    TGCGGTTCGT GCTCTTGGAT TTCTTCCTGA GGAAGGTCAT GGTGTCTATG 
    TCACAAGATG GTGTCACGGG AGTCCCGCTC ACCGATATGG CCTCTACGCG 
    CTTCAATGGA TCGTGGAAGT TAATGGGAAG AAGACTCCTG ACCTAAACGC 
    ATTCGCAGAT GCTACCAAGG AGCTAGAACA CGGGCAGTTT GTGCGTATTA 
    GGACTGTTCA TCTAAACGGC AAGCCACGAG TATTGACTCT GAAACAAGAT 
    CTCCATTACT GGCCGACTTG GGAATTGAGG TTCGACCCAG AGACTGCTCT 
    TTGGCGGAGA AATATATTGA AAGCCTTGCA GTAAAAGCCA TTTGGTGTTT 
    CTCTGAAAGT CTCTTATGTC TCTCATTGCT CCAACTTTGT TGTATTTCTA 
    TCATTCTTCT ACTCAAATTC TTCATTAATT CATCATACTA AAAGACCTGT 
    CACTACAGTT TACAGAAAAA CTGAAGGATT TTACATCCAG TAAAAATGTT 
    CAAACCAAAA A

    Gene models with high sequence identity

    1. AT3G03380.1 [+] show detail - DegP protease 7
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart PDZ/DHR/GLGF 0.229999998797964
    HMMSmart PDZ/DHR/GLGF 0.420000001910726
    superfamily PDZ/DHR/GLGF 3e-07
    superfamily PDZ/DHR/GLGF 6.8e-12
    superfamily Serine/cysteine peptidase, trypsin-like 1.5e-17
    Gene3D G3DSA:2.30.42.10 1e-06

    See the detailed result >

    AT3G03380.1

    Model type
    Protein coding
    Short Description
    DegP protease 7
    Curator Summary
    Encodes a putative DegP protease.
    Computational Description
    DegP protease 7 (DegP7); CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03370.1); Has 8327 Blast hits to 7895 proteins in 2064 species: Archae - 65; Bacteria - 6254; Metazoa - 235; Fungi - 503; Plants - 137; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR