F16439

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16439

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16439

Determination of introduced cDNA(s)

  • RAFL09-95-B11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-95-B11 - Resource: pda09078

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-95-B11 - full reading 
    ATTCCTCTTT TCTTCGTCTC CCACCATTTC TGCAGAAGAA GACAAATAAA 
    AAAGCTCTCA TTTATCTTCG TGGAGATCTA AAAGAAGGAG GAAGACATTT 
    CTTCCCTCTG GATCTCCAAA AGTAAGAACA TTTACAAGAA ACGAGAGGTT 
    TGGGTGGGGA AGGAAAGAAG GAGGAAGAGG CAATGTCAGC TAGGTATTGG 
    TGTCACATGT GTTCACAAAT GGTGAATCCA GTTATTGGTG CCGAGATCAA 
    ATGCCCCTTT TGCCAAAGCG GGTTTGTCGA GGAAATGAGC CGTGAGATTA 
    ATGGCGGCAG CAGTAGCAGT CTAAGGGAGG TTCAAGACCC TGAGATTGAT 
    TTTGGTACAG ACCGTGCATT GTCTCTATGG GGTCCAATCT TGCTTGGAAT 
    GATGAGTAAT CCTCGTAGAC GTAGAAGGTT TAGGAGGACA GAGTTTGGTG 
    TGGATAATGA TGAGGTCAAT GTATCTGATG ATGTTGATGG AAATGACAGC 
    GTCGATATTG ATCGACATCA TCATCGTCGT CATCGCCACA GGCAACAAGG 
    TAGAGAGATT GATTTAGACA GAGAGTTTGA GTCTATCCTT AGGAGGAGAC 
    GGAGAAGCTC AGCTACTATA TTGCAGTTGC TTCAGGGTAT TCGTGCAGGG 
    ATTGCTTCTG AGTATGAGAG CTCGGATCGA GACCTGTTAA ATCAATCAGC 
    TGTTGTTCAG GGTTCAACGA GTTTGAATCA AAACCGGAAC AATACTTCTC 
    TTTCTGCAAT TGGAGATTAC TTTGTTGGAT CCAGTTTAGA CCATTTGCTT 
    GAACATCTAG CTGATAATGA TTCAATCAGG CACGGGAGTC TTCCAGCACG 
    TAAAGAAGTT GTGGATAATC TCCCAACGGT TAAGATAAGT GAATCATTGC 
    AGTGCTCGAT TTGTTTGGAT GATTTTGACA AAGGAAGTGA AGCTAAAGAG 
    ATGCCGTGTA AGCACAAGTT TCACATCCGG TGTATAGTAC CGTGGCTCGA 
    GCTTCACAGT TCATGTCCCG TGTGCCGATA TGAACTCCCT CCTGATGATG 
    AGACCAAGGT TAATCCTGTA AGACCGAGAA CAAGAACTCT AGAGATCAAC 
    GTAAGTAATG AGAATGTGGA AGATGATGCA AGGAACAGTA ATGTGAGCGA 
    GAGAAGGTTC TCTTTTCCAT GGCCGTTCAG CGGATTATTC TCTTCATCCT 
    CTTCGTCATC CGCATCGGCC TCGGGGTCAT CTCATCTCGG TGAGAACTCG 
    TAAACTGCTA TTCCTCAGCT TATAGTACAT AAAATCTTGT TCACTCAGAT 
    TGTTGAATAC TGCATAACAA ATAAACACTT TCGAGGAATG GAATCTTTTC 
    TTTATTTG

    Gene models with high sequence identity

    1. AT4G26400.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 3.6e-08
    Gene3D no description 5.6e-14
    ProfileScan Zinc finger, RING-type 12.489
    HMMPanther RING ZINC FINGER PROTEIN 3.9e-40
    superfamily RING/U-box 1.1e-16
    HMMPfam Zinc finger, C3HC4 RING-type 8.4e-07

    See the detailed result >

    AT4G26400.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR