F16509

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16509

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16509

Determination of introduced cDNA(s)

  • RAFL06-72-O11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-72-O11 - Resource: pda03414

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-72-O11 - full reading
    GTCTCCTAGA GCGACTTGAA TCCTTGAGCT TTCAAACTCA TCTCCCGGAG 
    CTTCCCTTTT CTCTTTACTC TCTCTCTCTC TCTCTCTCTC TCTCACTTTT
    CTCTGTTTTT TTTCTTGGTG TCTGTCTTAA TTCCACCATT AATGCTCTCT
    ACCTTCCCTT TTACTCTTCC CCTGCTTTTG TGTTTTCTCT TTCTCTTTTC
    TAAACCCTTT CAAACTCTTC TTCCTCTTCT TTCTTTTTCT CCAATAACAG
    TTTCTTGTGC TCATGTTAAA ACTGCAGCTC TTTTCCGGTA AAAAGAAAAG
    CTTTTTGGTC AGTTTAGTTA TCCTCAAGCA TCAAAACCTT ACTTGAGCTC
    TGCATCATCA TCCATGGCCA TGGCCGACTA GCCTTCTTTC TTCGCTTTTT
    ACCTCCTTAA TATCTTTAAA AGCGAGAGGA AATGTTCAAC GGCGCCGTTT
    CACTACTCTT CCTCTTCCTT GCCGTCGTTT CAGCGAGGGC AGATCCGACA
    TTCAACGACG ACGTTTTGGG TCTCATCGTT TTCAAGGCCG GACTCGACGA
    CCCTCTCTCT AAGCTCTCTT CTTGGAACTC GGAAGACTAC GATCCCTGCA
    ACTGGGTCGG TTGCACATGC GACCCTGCCA CCAATCGGGT CTCGGAGCTC
    CGCCTTGACG CCTTCTCTCT CTCCGGTCAC ATCGGCCGTG GCCTTCTCCG
    TCTCCAGTTC CTCCACACCT TGGTCCTCTC CAACAACAAC CTCACCGGAA
    CCCTAAACCC CGAGTTCCCT CACCTCGGCA GCCTCCAAGT CGTCGATTTC
    AGTGGCAATA ATCTCTCGGG TCGGATCCCA GACGGGTTCT TCGAGCAATG
    CGGGTCCTTG AGGTCCGTTT CCTTGGCTAA CAACAAACTC ACAGGTTCTA
    TTCCTGTCTC CCTCAGCTAC TGTTCTACTC TCACCCATCT TAACCTCTCA
    AGCAATCAAC TCTCTGGGAG GTTGCCCCGA GATATCTGGT TCCTCAAGAG
    CTTAAAGTCC CTTGATTTCT CTCACAATTT CCTCCAAGGA GATATCCCCG
    ATGGCCTCGG CGGTCTCTAC GATCTCCGTC ATATCAACTT ATCCAGGAAC
    TGGTTTTCCG GTGACGTTCC TTCCGACATC GGACGATGCT CTTCCCTTAA
    ATCGCTTGAC TTGAGTGAGA ACTACTTCTC CGGGAATCTT CCGGATTCGA
    TGAAAAGCCT GGGCTCTTGC AGCTCCATCC GTCTGCGAGG AAACTCTCTG
    ATCGGAGAAA TCCCTGATTG GATCGGCGAC ATTGCCACTC TCGAGATTCT
    TGATCTCTCC GCCAACAACT TCACCGGCAC TGTCCCATTC TCCCTCGGAA
    ATCTCGAGTT TTTGAAGGAT CTCAATCTAT CCGCAAACAT GCTCGCTGGA
    GAGCTCCCAC AGACTCTCTC CAACTGCTCC AACCTAATCT CCATTGATGT
    CAGCAAGAAT TCATTCACCG GAGATGTGCT TAAGTGGATG TTCACCGGAA
    ACTCTGAAAG TTCCTCGCTT TCCAGATTTA GCCTCCACAA AAGATCAGGG
    AACGACACCA TTATGCCCAT CGTTGGATTC CTCCAAGGTC TCCGGGTCCT
    CGATCTGTCT TCAAACGGCT TCACCGGTGA ATTACCGTCT AACATTTGGA
    TTCTCACAAG TTTGTTGCAG CTCAATATGT CCACCAACTC TCTCTTCGGT
    TCCATACCCA CCGGCATTGG AGGATTGAAA GTCGCTGAGA TTCTTGATCT
    TAGTAGTAAT CTTCTCAACG GAACCCTTCC TTCTGAGATC GGAGGAGCCG
    TCTCCCTGAA ACAACTTCAT CTCCACAGAA ACCGCCTCTC CGGCCAGATT
    CCGGCAAAGA TCTCTAACTG TTCGGCTTTA AACACAATAA ATCTATCGGA
    GAATGAACTA TCCGGTGCGA TTCCGGGGAG CATTGGCAGT CTGAGCAACC
    TTGAGTACAT TGATCTGTCG AGAAACAATC TCTCGGGAAG TCTTCCCAAA
    GAAATAGAGA AACTTTCGCA TCTCTTGACC TTTAACATCT CCCACAACAA
    CATCACAGGG GAGCTGCCAG CTGGAGGTTT CTTCAACACC ATCCCTCTCT
    CTGCTGTCAC CGGAAACCCA TCCCTTTGTG GCTCCGTCGT TAACCGCTCA
    TGTCTCTCTG TCCACCCCAA ACCAATCGTC CTCAACCCCA ACTCCTCCAA
    TCCAACAAAT GGTCCTGCTC TCACAGGGCA GATCAGGAAG AGCGTTCTGA
    GCATATCTGC GCTCATTGCC ATTGGCGCAG CTGCCGTCAT TGCCATCGGG
    GTGGTGGCTG TAACTCTGCT CAACGTGCAC GCCCGATCTA GTGTTTCACG
    TCACGATGCA GCTGCTGCTC TCGCTCTGTC GGTTGGAGAG ACGTTCAGCT
    GTTCGCCAAG TAAAGATCAA GAGTTTGGAA AGCTGGTCAT GTTCTCAGGG
    GAAGTGGACG TGTTTGACAC CACTGGCGCT GATGCGTTGC TCAACAAGGA
    CAGCGAGCTG GGACGAGGCG GGTTCGGTGT GGTGTACAAA ACGAGTCTTC
    AGGATGGGCG TCCTGTGGCA GTTAAGAAAC TGACAGTGTC GGGTCTAATA
    AAGTCGCAGG AGGAGTTCGA GAGAGAGATG AGAAAACTCG GGAAGCTGAG
    GCACAAGAAT GTGGTGGAGA TAAAAGGGTA CTACTGGACG CAATCGCTGC
    AGCTCTTGAT CCACGAGTTT GTTTCAGGCG GAAGCTTGTA CAGACATCTC
    CACGGAGATG AGAGCGTTTG CCTAACTTGG CGTCAACGTT TCAGTATCAT
    TCTAGGGATA GCAAGAGGTC TGGCTTTTCT GCATAGCAGT AACATCACTC
    ACTACAACAT GAAAGCAACG AATGTGCTCA TTGACGCCGC AGGGGAGGCT
    AAAGTCTCTG ACTTTGGGCT GGCCAGACTG TTGGCTTCGG CGCTGGACAG
    GTGCGTCTTG AGTGGCAAGG TACAGAGCGC GTTGGGGTAC ACAGCCCCGG
    AGTTTGCATG CCGGACAGTC AAGATAACCG ACAGGTGCGA TGTTTACGGG
    TTTGGGATCC TGGTGCTGGA GGTGGTGACA GGGAAGAGAC CCGTGGAGTA
    CGCTGAGGAC GACGTCGTGG TCTTGTGTGA GACGGTGAGA GAAGGGTTAG
    AAGAAGGGAG GGTGGAGGAG TGCGTTGACC CTCGGTTGAG AGGGAATTTT
    CCAGCGGAGG AGGCAATACC GGTGATTAAA CTAGGGTTGG TGTGTGGGTC
    CCAAGTGCCG TCGAATAGGC CGGAGATGGA GGAAGTGGTG AAGATATTAG
    AGCTCATACA ATGTCCCTCT CATGACTTAG AGTGATTAGT CAACTACAGA
    TGAATCAATC CTCCTTGTTT GTATTTCTTC ATTCCTTGTT CAATTTTCAT
    ATTATCATAA TATAGTGTTC GTCTTTCC

    Gene models with high sequence identity

    1. AT5G01890.1 [+] show detail - Leucine-rich receptor-like protein kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 35.354
    PatternScan Protein kinase, ATP binding site 0
    HMMSmart Leucine-rich repeat, typical subtype 11
    HMMSmart Leucine-rich repeat, typical subtype 23
    HMMSmart Leucine-rich repeat, typical subtype 110
    HMMSmart Leucine-rich repeat, typical subtype 30
    HMMSmart Leucine-rich repeat, typical subtype 260
    HMMSmart Leucine-rich repeat, typical subtype 47
    HMMSmart Leucine-rich repeat, typical subtype 46
    HMMSmart Serine/threonine-protein kinase domain 1.6e-27
    HMMSmart Tyrosine-protein kinase, catalytic domain 7.3e-18
    FPrintScan Toll-like receptor, leucine rich repeat-containing 0.000085
    FPrintScan Toll-like receptor, leucine rich repeat-containing 0.000085
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 8.6e-262
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 8.6e-262
    Gene3D no description 2.3e-31
    Gene3D no description 1.7e-43
    Gene3D no description 3.7e-48
    Gene3D no description 3.8e-16
    Gene3D no description 4.6e-40
    superfamily L domain-like 2.3e-70
    superfamily Protein kinase-like domain 1.1e-64
    superfamily RNI-like 2.3e-56
    HMMPfam Serine-threonine/tyrosine-protein kinase 4.6e-42
    HMMPfam Leucine-rich repeat 0.78
    HMMPfam Leucine-rich repeat 0.044
    HMMPfam Leucine-rich repeat 0.13
    HMMPfam Leucine-rich repeat 0.062
    HMMPfam Leucine-rich repeat 0.33
    HMMPfam Leucine-rich repeat 0.11
    HMMPfam Leucine-rich repeat 0.16
    HMMPfam Leucine-rich repeat 0.006
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.0000000000011

    See the detailed result >

    AT5G01890.1

    Model type
    Protein coding
    Short Description
    Leucine-rich receptor-like protein kinase family protein
    Computational Description
    Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G56370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR