F16519

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16519

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16519

Determination of introduced cDNA(s)

  • RAFL09-17-I01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-17-I01 - Resource: pda01900

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-17-I01 - full reading 
    ATCAGACAAT CACAAATCTT TCTCTTTCTC TTTCTCTCTC TAACACAATT 
    TAGAACAAAA GTTTCTTCTT TCTTCTCTCC CGAGAGGCCT CTCGCTGTTC 
    ATTGAAGTTC TCTTAGAATT TTCTATCACC TTGGTTGTGT AATTTGCAAA 
    ACAGACAACA ATGGTTGAGC GTGGGAAGAG GACTCACAAT CGTTTCAGAG 
    ACAACAACAA TGACAACAAC CGGAATCAAA GGAGAAGACT TTCTTACGAA 
    TCCGAAGAAA AAAAGATCGA TAACAAAGAC GATCTCGTTG TTGTTTACAG 
    AATCTTATGC CCAAGTGGTG TCATGGGAAG TGTTATAGGC AAAAGTGGCA 
    AAGTTATTAA CTTGATTAGG CAAGAAACTA GAGCTAGGAT CAAAGTTGTT 
    GATCCTTTTC CAGGTTGTAG CGAAAGAGTC ATAACGATCT TTTGCTCGGT 
    TTCGGAGAAG AAAGACATTG TTGACATTGA GTATAGTGAA TTGGATTACT 
    CTGTTCCTTT GTGTTCTGCT CAAGCTGCTC TTCTTAAAGT CCATGATGCT 
    ATTGTGGCTT CTTTAGCTAC TGCTGCTGAG AACACTAAGA TTGATAGAGA 
    TGACTTTAGA GAATGTCGTC TTTTAGTTCC GTCTAGTCAG TGTTCTATTG 
    TCATTGGTAA ATCTGGTTCG ATTATTAAGA ACATTAGAGG TAGAACTAGA 
    GCTAACGTTA AGGTTGTCTC TAAAGATGTT TCTGATCCTT CTCACACTTG 
    TGCCATGGAT TTTGACAACA TTGTTATGAT ATCTGGTGAG ACTGAATCCG 
    TGAAGAAGGC ACTTTTCGCT GTTTCTGCAA TCATGTACAA AGTCAGTCCT 
    CGAGAACAGA TTCCTCTGGA TACAACTGTC CAAGAAGTTC CCGCTAGTAT 
    TATAATTCCC TCTGATCTGT CTATCTATCC ACAAGCCGGT TTATACCCAA 
    GTCAGGATTC TATTTTCCAA CATGGGGCTA ATGTTTCATC GTTTATCGGT 
    ACACTACCTC AGGGTTATGG AGAAAATGCT GCAAATCCTG TGCCGGTTTT 
    TTCTGCTTCT GCTCTTCCTG TTGTTCATGG TTTTGGTGGG TCTTCCAGAT 
    CAGAAAAGTT GGCTATAAAA GTTATTTGCT CTTCTTCCAA AATTGGTCGT 
    GTTATCGGGA AAGGAGGATT AACCATTAAG GGAATAAGAC AAGCAAGCGG 
    GTCTCATATC GAAGTTAATG ACTCGAGGAC AAATCATGAT GATGACTGTG 
    TTATCACTGT CACTGCTACA GAGTCTCCTG ATGATTTGAA GTCTATGGCG 
    GTTGAAGCTG TTCTTCTACT TCAAGAGAAA ATTAATGATG AAGACGAGGA 
    CAAAGTTAAA ATGCAACTCC TTGTATCTTC TAAGGTAATA GGATGCATTA 
    TAGGGAAAAG TGGCTCAATC ATAAGTGAAA TCAGGAAAAG GACAAAGGCC 
    GATATTCATA TCTCGAAAGG AAATAATACG CCTAAGTGTG CTGATCCCAA 
    TGATGAGCTC GTTGAGATAT CTGGTGAAGT AAGCAATGTG AGAGATGCTC 
    TTATTCAGAT AGTTCTGAGG CTTCGAGATG ATGTTTTAAG GGATAGAGAG 
    ACTGGTTCCA GGAATCAACC TCCTGCAAGA TCTGAGAATA ACAATTTCTT 
    CTCTTCAAGT AGTAGTAATA CTGGTCTTGC ACTTCCTCAA TCTTTCATGT 
    CTTCTGTTCC GCAAGTTGCT TCTGTAGATT TCAATAGGAG ACCAGAAACC 
    GGGAGCAGCA TGAGCATGCT TCCTTCGAGT GGTGGAATCT ATGGTTATGG 
    AAGTTTTCCG GTGGGCAATA CAAGTTATGG ATCCAACTCC TCTTACTCAT 
    CCAATCTATA TGGAGGATTG CCTCAGTCTA CTACTATGGA GGTTCGAATC 
    CCAGCAAATG CAGTGGGTAA AGTTATGGGC AGAGGAGGAG GCAACTTGGA 
    CAACATAAGA AGGATATCAG GAGCCATGAT AGAAATTTCT GATTCCAAAA 
    ATTCCCATGG CGGTCGCGTT GCTCTCATTT CCGGGACATC TGAACAGAAG 
    CGTACCGCAG AGAACTTGTT CCAAGCTTTT ATCATGTCCA CTTGAATAAT 
    TTGCTCTGCC CCTTAATCCT TTTCCATGGA AGTGTGTTCC ATCAATCTAC 
    CTCTCAGTGG ATTTCTTTGA TCGGGTTTCT CAGGCTTTCC TCCTTCCATC 
    AAGCTCATGT TTAGATATGG TTGCATCTCT CATCAAACAT TTCGGTATCT 
    CATCTCGACT CAGTTACTTT TGGTTTCTCG TGCTAGACAT TTTATAGTCT 
    TTCAGGACCA TTCTTTTCCC CTTTCCTTGC GAGCTGTTCG TACTATAACT 
    ACTTATCTCC GTGCAATAAA ACAAAATCGT TCTTATAGCA AAAAAAAAAA 
    AAAA

    Gene models with high sequence identity

    1. AT5G46190.1 [+] show detail - RNA-binding KH domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.6e-09
    Gene3D no description 2e-08
    Gene3D no description 2.9e-06
    Gene3D no description 1.1e-12
    Gene3D no description 5.8e-12
    ProfileScan K Homology, type 1 12.014
    ProfileScan K Homology, type 1 13.376
    ProfileScan K Homology, type 1 12.789
    ProfileScan K Homology, type 1 15.472
    ProfileScan K Homology, type 1 15.158
    HMMSmart K Homology 2.3e-08
    HMMSmart K Homology 2.9e-11
    HMMSmart K Homology 3.4e-08
    HMMSmart K Homology 1.6e-12
    HMMSmart K Homology 2.2e-09
    HMMPanther RNA-BINDING PROTEIN RELATED 2.8e-229
    HMMPanther RNA-BINDING PROTEIN RELATED 2.8e-229
    HMMPfam K Homology, type 1, subgroup 6.1e-11
    HMMPfam K Homology, type 1, subgroup 1e-14
    HMMPfam K Homology, type 1, subgroup 2e-10
    HMMPfam K Homology, type 1, subgroup 7.5e-13
    HMMPfam K Homology, type 1, subgroup 1.8e-12
    superfamily Eukaryotic type KH-domain (KH-domain type I) 1.5e-15
    superfamily Eukaryotic type KH-domain (KH-domain type I) 5.8e-15
    superfamily Eukaryotic type KH-domain (KH-domain type I) 4.8e-13
    superfamily Eukaryotic type KH-domain (KH-domain type I) 6.7e-13
    superfamily Eukaryotic type KH-domain (KH-domain type I) 2.9e-10

    See the detailed result >

    AT5G46190.1

    Model type
    Protein coding
    Short Description
    RNA-binding KH domain-containing protein
    Computational Description
    RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G18375.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR