F16550

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16550

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16550

Determination of introduced cDNA(s)

  • RAFL11-02-J15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-02-J15 - Resource: pda02206

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-02-J15 - full reading 
    GTCTTCAGCA GTCAGTGCGC ATCCGTAGGA GAAAAGTGTG AGAATCTGCC 
    ACCATGGGTC GTATGCACAG TCGGGGAAAG GGTATTTCAG CCTCTGCGTT 
    GCCTTACAAG AGATCGTCTC CGAGCTGGCT CAAGACCACC TCTCAGGATG 
    TTGATGAATC AATCTGCAAA TTTGCCAAAA AGGGATTGAC CCCTTCCCAG 
    ATTGGTGTGA TTCTCCGTGA CTCTCACGGT ATCCCTCAGG TCAAGAGTGT 
    TACTGGAAGC AAGATCTTGA GGATACTCAA AGCTCATGGC CTTGCTCCTG 
    AGATCCCTGA GGATCTGTAC CATCTAATTA AGAAGGCTGT TGCCATCCGT 
    AAACATCTCG AGAGGAACAG GAAGGACAAG GATTCCAAGT TCAGGCTCAT 
    CTTGGTTGAG AGCAGGATTC ACCGCCTCGC TCGCTATTAC AAGAAGACCA 
    AGAAGCTCCC TCCCGTCTGG AAGTACGAAT CCACTACCGC GAGCACCCTT 
    GTGGCTTAAG CTGGAGTCTG GAGGAGGATT CTACTAGTCT GTTGCTTCCC 
    TTTTGTTTTG ATGAATTCTC AACTTTAGTC ATAATGTGTC AGCAGGATTT 
    TTGTGTTTGC CTCTCTTTTT TTTCCGGAAT CTTATGCTCC CTTGTTTAAG 
    AGAATCGTAT GATCTTGAAT TTACTATTGA ATAAGCTTTT G

    Gene models with high sequence identity

    1. AT4G00100.1 [+] show detail - ribosomal protein S13A
      E-value: 0; Score: 99.57

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S13/S15, N-terminal 2.9e-30
    HMMPfam Ribosomal protein S15 2.7e-24
    HMMPanther 40S RIBOSOMAL PROTEIN S13 4.2e-119
    HMMPanther RIBOSOMAL PROTEIN S15P/S13E 4.2e-119
    superfamily S15/NS1, RNA-binding 1.3e-21
    PatternScan Ribosomal protein S15 0

    See the detailed result >

    AT4G00100.1

    Model type
    Protein coding
    Short Description
    ribosomal protein S13A
    Curator Summary
    Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
    Computational Description
    ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR