F16603

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16603

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16603

Determination of introduced cDNA(s)

  • RAFL09-43-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-43-L08 - Resource: pda08380

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-43-L08 - full reading 
    AAAAAGAAAA ACATTCGACA TTACAGAAAA GAAAAAACTA TAAGAAAATC 
    TTAATTAATA AAATAATATA TTCAGGAGGG CGAGAGAGAG AGAGAGGGAT 
    GATGAAGGAA GAACAATGGG CACCAGTGAT AGTAATGTTA ATATCAAGTG 
    TTGCAATGGG ATCAGTGAAC GCTCTCGTTA AGAAAGCACT TGATGTTGGT 
    GTTAACCATA TGATCTTTGG TGCTTATAGA ATGGCTATTT CTGCTCTAAT 
    CTTGGTTCCG TTTTCTTATA TTTGGGAGAG GAAAACAAGG CCACAACTAA 
    CGTTCATGCT TTTGTGCGAA CATTTCATCA GCGGATTACT TGGGGCAAGT 
    TTGATGCAAT TTTTCTTTTT ACTTGGGCTT TCGTACACGT CAGCAACTGT 
    TTCGATGGCT CTAGTTAGCA TGTTACCTGC TATCACCTTT GCGTTAGCCC 
    TTATTTTCCG GATAGAGAAT GCGCAAAACC TAAAGAGCAA AGCAGGCGTG 
    CTCAAAGTAA TGGGAACCCT AATTTGCATA ATGGGAGCAA TGTTGTTGAC 
    ATTTTACAAA GGCCCAGAGT TATCAAACCC TCATTCTCAT CCACAAGCTC 
    GTCACAACAA CAACAATAAC AATGGTCACG ACCAAACAAA GAAATGGCTT 
    CTAGGCTGTC TTTATTTAGT CATTGGGACA GTGTTGTTGT CTCTATGGAT 
    GTTGTTTCAA GGGAAATTAA GCTTTAAGTA TCCTGGAAAT AAATACTCAA 
    GCACTTGTCT CATGTCAGTC TTCGCATCAT TTCAATGTGC TATTTTGAGT 
    CTTTATAAAA GTAGAGACGT CAAAGATTGG ATCATTGAAG ATAAATTCGT 
    CATTTTGGTC ACCCTTTACG CTGGAATAGT GGGACAAGCG ATGTCGACAG 
    TGGTAACGTC ATGGTCCATA AAAATGACAG GAGCAGTTTT CGTCTCAACA 
    TTCAGCCCCG TCAGCCTCGT CGCCGCTACG TTATTCGATT TCCTCATCTT 
    ACACTCTCCT TTATACCTTG GCAGCATACT TGGATCAGTA GTGACTATAA 
    CTGGCCTCTA CGTTTTTCTT TGGGGAAGGA AGAATGAGAC AGATCAGTCT 
    GTTTCGAAGA CTTTGAACAG TTCCCAGTTT TCTCAGAATA AGGATAACGA 
    AGACCATACA ATAGCAAATC ATAAGGATAC TAATTTGCCC GTTTGATATA 
    TATATATATC ATATTTATAG AGGTAGCTAG ATATTTGCTA TCATAATCGT 
    GATAGTACTG TCATTGATCA GCTCTATATT ATAAGACTTA TGTTCTTCTG 
    TATTGCCAAC TATAGCTCAC TGTATGTTTG TAACCAGTTG GATTGGTTTA 
    ATTGGAAATA AAAGTAGTTG GAGATGTA

    Gene models with high sequence identity

    1. AT4G01430.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF6, transmembrane 6.1e-09
    HMMPfam Protein of unknown function DUF6, transmembrane 2.6e-07
    superfamily Multidrug resistance efflux transporter EmrE 1.3e-10
    superfamily Multidrug resistance efflux transporter EmrE 2.4e-07

    See the detailed result >

    AT4G01430.1

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G01070.1); Has 2489 Blast hits to 2481 proteins in 402 species: Archae - 14; Bacteria - 1085; Metazoa - 6; Fungi - 8; Plants - 1212; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR