F16603

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16603

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16603

Determination of introduced cDNA(s)

  • RAFL09-43-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-43-L08 - Resource: pda08380

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-43-L08 - full reading
    AAAAAGAAAA ACATTCGACA TTACAGAAAA GAAAAAACTA TAAGAAAATC 
    TTAATTAATA AAATAATATA TTCAGGAGGG CGAGAGAGAG AGAGAGGGAT
    GATGAAGGAA GAACAATGGG CACCAGTGAT AGTAATGTTA ATATCAAGTG
    TTGCAATGGG ATCAGTGAAC GCTCTCGTTA AGAAAGCACT TGATGTTGGT
    GTTAACCATA TGATCTTTGG TGCTTATAGA ATGGCTATTT CTGCTCTAAT
    CTTGGTTCCG TTTTCTTATA TTTGGGAGAG GAAAACAAGG CCACAACTAA
    CGTTCATGCT TTTGTGCGAA CATTTCATCA GCGGATTACT TGGGGCAAGT
    TTGATGCAAT TTTTCTTTTT ACTTGGGCTT TCGTACACGT CAGCAACTGT
    TTCGATGGCT CTAGTTAGCA TGTTACCTGC TATCACCTTT GCGTTAGCCC
    TTATTTTCCG GATAGAGAAT GCGCAAAACC TAAAGAGCAA AGCAGGCGTG
    CTCAAAGTAA TGGGAACCCT AATTTGCATA ATGGGAGCAA TGTTGTTGAC
    ATTTTACAAA GGCCCAGAGT TATCAAACCC TCATTCTCAT CCACAAGCTC
    GTCACAACAA CAACAATAAC AATGGTCACG ACCAAACAAA GAAATGGCTT
    CTAGGCTGTC TTTATTTAGT CATTGGGACA GTGTTGTTGT CTCTATGGAT
    GTTGTTTCAA GGGAAATTAA GCTTTAAGTA TCCTGGAAAT AAATACTCAA
    GCACTTGTCT CATGTCAGTC TTCGCATCAT TTCAATGTGC TATTTTGAGT
    CTTTATAAAA GTAGAGACGT CAAAGATTGG ATCATTGAAG ATAAATTCGT
    CATTTTGGTC ACCCTTTACG CTGGAATAGT GGGACAAGCG ATGTCGACAG
    TGGTAACGTC ATGGTCCATA AAAATGACAG GAGCAGTTTT CGTCTCAACA
    TTCAGCCCCG TCAGCCTCGT CGCCGCTACG TTATTCGATT TCCTCATCTT
    ACACTCTCCT TTATACCTTG GCAGCATACT TGGATCAGTA GTGACTATAA
    CTGGCCTCTA CGTTTTTCTT TGGGGAAGGA AGAATGAGAC AGATCAGTCT
    GTTTCGAAGA CTTTGAACAG TTCCCAGTTT TCTCAGAATA AGGATAACGA
    AGACCATACA ATAGCAAATC ATAAGGATAC TAATTTGCCC GTTTGATATA
    TATATATATC ATATTTATAG AGGTAGCTAG ATATTTGCTA TCATAATCGT
    GATAGTACTG TCATTGATCA GCTCTATATT ATAAGACTTA TGTTCTTCTG
    TATTGCCAAC TATAGCTCAC TGTATGTTTG TAACCAGTTG GATTGGTTTA
    ATTGGAAATA AAAGTAGTTG GAGATGTA

    Gene models with high sequence identity

    1. AT4G01430.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF6, transmembrane 0.0000000061
    HMMPfam Protein of unknown function DUF6, transmembrane 0.00000026
    superfamily Multidrug resistance efflux transporter EmrE 0.00000000013
    superfamily Multidrug resistance efflux transporter EmrE 0.00000024

    See the detailed result >

    AT4G01430.1

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G01070.1); Has 2489 Blast hits to 2481 proteins in 402 species: Archae - 14; Bacteria - 1085; Metazoa - 6; Fungi - 8; Plants - 1212; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR