F16604

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16604

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16604

Determination of introduced cDNA(s)

  • RAFL09-61-P09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-61-P09 - Resource: pda17786

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-61-P09 - full reading 
    GGTTTTCTCT GCCGATTGCG GCTTCGGTCT CGTCTTCTTC AGCTGCTCCG 
    TCGGTTTCAC GACGCCGGAT TTCTCCCGCC AGGTTTCTGG AATTCAGAGG 
    TTTGAAGTCT TCGCGGAGTT TGGTGACTCA GTCGGCCAGT CTGGGTGCGA 
    ATCGTAGAAC CAGAATCGCT CGCGGTGGAC GAATCGCCTG TGAGGCTCAG 
    GACACCACTG CCGCCGCCGT CGAAGTACCA AATCTGTCTG ATTCAGAATG 
    GCAAACAAAG GTTCTGGAAT CAGATGTCCC AGTTCTGGTC GAGTTCTGGG 
    CACCATGGTG TGGACCTTGC CGTATGATTC ACCCCATAGT TGACCAGCTA 
    GCCAAAGATT TCGCAGGGAA GTTCAAATTC TACAAAATCA ACACTGACGA 
    GAGCCCAAAT ACAGCAAACC GTTACGGGAT ACGAAGCGTT CCAACAGTAA 
    TCATCTTCAA AGGCGGTGAG AAGAAAGATA GCATCATTGG AGCTGTGCCT 
    AGAGAGACGT TGGAGAAAAC TATAGAAAGA TTCTTGGTCG AGTAACAAAA 
    TTTGACTCTT TTGTCACTCT GAACCATTTT ACCTTATCTT CTCTCTTGTA 
    ATCTCTGTAA AGTCTTTTAA GTTTTTGACT ATTATGTTAT CGTGGGTCCT 
    CTTTGTCTTC TTCAATAAAA AAAATGGAAA CAAAGTAAGA AAAAAA

    Gene models with high sequence identity

    1. AT3G15360.1 [+] show detail - thioredoxin M-type 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 0
    superfamily Thioredoxin-like fold 1.5e-38
    HMMTigr Thioredoxin 1.20000117458134e-44
    HMMPfam Thioredoxin domain 5.09999999999998e-29
    PatternScan Thioredoxin, conserved site 0
    HMMPanther PTHR10438:SF13 1.49999648196318e-45
    FPrintScan Thioredoxin-like subdomain 8.29999581180007e-09
    FPrintScan Thioredoxin-like subdomain 8.29999581180007e-09
    FPrintScan Thioredoxin-like subdomain 8.29999581180007e-09
    Gene3D Thioredoxin fold 1.10000150671643e-33
    HMMPanther Thioredoxin, core 1.49999648196318e-45

    See the detailed result >

    AT3G15360.1

    Model type
    Protein coding
    Short Description
    thioredoxin M-type 4
    Curator Summary
    encodes a prokaryotic thioredoxin
    Computational Description
    thioredoxin M-type 4 (TRX-M4); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, cell wall, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin M-type 1 (TAIR:AT1G03680.1); Has 22907 Blast hits to 21478 proteins in 3001 species: Archae - 325; Bacteria - 11943; Metazoa - 2959; Fungi - 1292; Plants - 2075; Viruses - 15; Other Eukaryotes - 4298 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR