F16607

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16607

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16607

Determination of introduced cDNA(s)

  • RAFL09-19-L09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-L09 - Resource: pda05526

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-L09 - full reading 
    CTTAGTTTGA ATTTACAGCT CTCATCACAA AGAGAGTAGC CCTTCTCGAA 
    GCGAGTGAGA TATGGCAACA AAGACCGATG ATTTTGCACC ATTTCCAGTT 
    AAAGATCAGC TTCCCGGAGT CGAATTTTGT GTCTCGAGCT CTCCAAATTG 
    GCCGGAAGGA ATAGTTCTTG GGTTTCAACA TTACATTGTA ATGCTTGGAA 
    CTACTGTAAT CATACCTTCC ATACTCGTCC CTCTAATGGG TGGTGGCGAC 
    GTGGAGAAAG CGGAAGTCAT AAACACAGTA TTGTTCGTGT CAGGAATAAA 
    CACGTTGTTG CAGAGTTTGT TCGGAAGTCG ACTTCCTGTG GTCATGGGAG 
    CTTCTTATGC TTACCTCATC CCTGCTCTTT ACATCACTTT CTCTTATCGA 
    TTCACTTACT ATCTCCATCC TCATCTCAGA TTTGAAGAGA CTATGAGAGC 
    TATTCAAGGA GCTCTTATCA TTGCTTCAAT AAGTCATATG ATAATGGGTT 
    TCTTCGGTTT GTGGAGAATC TTGGTCAGGT TTCTTTCTCC TCTTTCGGCT 
    GCTCCTCTTG TGATTCTCAC CGGCGTTGGC CTCCTCGCCT TTGCGTTTCC 
    TCAGCTTGCG AGATGTATAG AAATTGGACT CCCAGCATTG ATCATACTGA 
    TAATTTTATC TCAGTATCTT CCTCACTTGT TTAAGTGTAA GAGATCAATA 
    TGCGAGCAAT TCGCTGTTCT GTTCACAATA GCGATCGTCT GGGCTTACGC 
    AGAGATTCTG ACAGCAGCTG GAGCTTATGA CAAAAGACCG GACAATACAC 
    AGCTCAGTTG TCGAACAGAC CGGTCTGGTC TCATTAGTGC TTCTCCATGG 
    GTGAGAATTC CATATCCATT GCAATGGGGA CGTCCAAGTT TCCATGGAAG 
    TGATGCATTC GCAATGATGG CAGCTACTTA CGTGGCGATT GTCGAGACGA 
    CAGGTTCCTT CATCGCGGCT TCAAGATTTG GCAGTGCAAC TCATATCCCT 
    CCCTCGGTGC TTAGCCGTGG CATTGGATGG CAGGGCATAG GCGTTTTGCT 
    GAATGGACTG TTTGGAACAG CAACTGGTTC CACAGCTTTG GTAGAAAATA 
    CAGGGCTTCT AGGATTAACG AAGGTTGGGA GCAGAAGAGT GGTTCAGATA 
    TCTGCAGGTT TCATGATCTT CTTCTCCATT TTCGGGAAGT TTGGGGCTGT 
    TCTTGCATCA ATACCTTTAC CAATCTTTGC AGCTCTGTAC TGTGTTCTAT 
    TCGCCTATGT TGCTTCTGCG GGACTTGGCC TTCTTCAGTT CTGCAACTTA 
    AACAGCTTTA GGAATAAATT TATCCTCGGC TTCTCCATCT TCATTGGACT 
    CTCTGTGGCG CAATACTTCA CCGAATATCT ATTCATCTCT GGTCGTGGAC 
    CTGTCCACAC TCGCACTTCT GCTTTCAACG TGATAATGCA AGTGATATTC 
    TCTTCCGCTG CAACGGTTGG GATAATGGCA GCGTTCTTGT TGGACTGTAC 
    TCATAGCTAT GGACATGCCT CGGTGAGGAG AGACAGCGGA AGACATTGGT 
    GGGAGAAATT CAGAGTCTAC CACACTGATA CTCGAACAGA AGAATTTTAC 
    GCATTGCCTT ACAACCTCAA CCGATTCTTC CCTTCATTCT GAAAATCCCG 
    AAAACCCAAA ACTCGGTTTT TTCAGAGTGT GAGAAACCTG CATCTAGAGA 
    GATACATGTA TAATACAAAT AACTTTCCAC CTAGATAACT TTTGATGTTA 
    TTTCCCTTTT TGCC

    Gene models with high sequence identity

    1. AT1G49960.1 [+] show detail - Xanthine/uracil permease family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SODIUM-DEPENDENT VITAMIN C TRANSPORTER 1.9e-276
    HMMPanther Xanthine/uracil/vitamin C permease 1.9e-276
    HMMPfam Xanthine/uracil/vitamin C permease 8.5e-64

    See the detailed result >

    AT1G49960.1

    Model type
    Protein coding
    Short Description
    Xanthine/uracil permease family protein
    Computational Description
    Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G62890.3); Has 9237 Blast hits to 9206 proteins in 1901 species: Archae - 67; Bacteria - 7526; Metazoa - 351; Fungi - 134; Plants - 458; Viruses - 6; Other Eukaryotes - 695 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR