F16607

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16607

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16607

Determination of introduced cDNA(s)

  • RAFL09-19-L09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-L09 - Resource: pda05526

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-L09 - full reading
    CTTAGTTTGA ATTTACAGCT CTCATCACAA AGAGAGTAGC CCTTCTCGAA 
    GCGAGTGAGA TATGGCAACA AAGACCGATG ATTTTGCACC ATTTCCAGTT
    AAAGATCAGC TTCCCGGAGT CGAATTTTGT GTCTCGAGCT CTCCAAATTG
    GCCGGAAGGA ATAGTTCTTG GGTTTCAACA TTACATTGTA ATGCTTGGAA
    CTACTGTAAT CATACCTTCC ATACTCGTCC CTCTAATGGG TGGTGGCGAC
    GTGGAGAAAG CGGAAGTCAT AAACACAGTA TTGTTCGTGT CAGGAATAAA
    CACGTTGTTG CAGAGTTTGT TCGGAAGTCG ACTTCCTGTG GTCATGGGAG
    CTTCTTATGC TTACCTCATC CCTGCTCTTT ACATCACTTT CTCTTATCGA
    TTCACTTACT ATCTCCATCC TCATCTCAGA TTTGAAGAGA CTATGAGAGC
    TATTCAAGGA GCTCTTATCA TTGCTTCAAT AAGTCATATG ATAATGGGTT
    TCTTCGGTTT GTGGAGAATC TTGGTCAGGT TTCTTTCTCC TCTTTCGGCT
    GCTCCTCTTG TGATTCTCAC CGGCGTTGGC CTCCTCGCCT TTGCGTTTCC
    TCAGCTTGCG AGATGTATAG AAATTGGACT CCCAGCATTG ATCATACTGA
    TAATTTTATC TCAGTATCTT CCTCACTTGT TTAAGTGTAA GAGATCAATA
    TGCGAGCAAT TCGCTGTTCT GTTCACAATA GCGATCGTCT GGGCTTACGC
    AGAGATTCTG ACAGCAGCTG GAGCTTATGA CAAAAGACCG GACAATACAC
    AGCTCAGTTG TCGAACAGAC CGGTCTGGTC TCATTAGTGC TTCTCCATGG
    GTGAGAATTC CATATCCATT GCAATGGGGA CGTCCAAGTT TCCATGGAAG
    TGATGCATTC GCAATGATGG CAGCTACTTA CGTGGCGATT GTCGAGACGA
    CAGGTTCCTT CATCGCGGCT TCAAGATTTG GCAGTGCAAC TCATATCCCT
    CCCTCGGTGC TTAGCCGTGG CATTGGATGG CAGGGCATAG GCGTTTTGCT
    GAATGGACTG TTTGGAACAG CAACTGGTTC CACAGCTTTG GTAGAAAATA
    CAGGGCTTCT AGGATTAACG AAGGTTGGGA GCAGAAGAGT GGTTCAGATA
    TCTGCAGGTT TCATGATCTT CTTCTCCATT TTCGGGAAGT TTGGGGCTGT
    TCTTGCATCA ATACCTTTAC CAATCTTTGC AGCTCTGTAC TGTGTTCTAT
    TCGCCTATGT TGCTTCTGCG GGACTTGGCC TTCTTCAGTT CTGCAACTTA
    AACAGCTTTA GGAATAAATT TATCCTCGGC TTCTCCATCT TCATTGGACT
    CTCTGTGGCG CAATACTTCA CCGAATATCT ATTCATCTCT GGTCGTGGAC
    CTGTCCACAC TCGCACTTCT GCTTTCAACG TGATAATGCA AGTGATATTC
    TCTTCCGCTG CAACGGTTGG GATAATGGCA GCGTTCTTGT TGGACTGTAC
    TCATAGCTAT GGACATGCCT CGGTGAGGAG AGACAGCGGA AGACATTGGT
    GGGAGAAATT CAGAGTCTAC CACACTGATA CTCGAACAGA AGAATTTTAC
    GCATTGCCTT ACAACCTCAA CCGATTCTTC CCTTCATTCT GAAAATCCCG
    AAAACCCAAA ACTCGGTTTT TTCAGAGTGT GAGAAACCTG CATCTAGAGA
    GATACATGTA TAATACAAAT AACTTTCCAC CTAGATAACT TTTGATGTTA
    TTTCCCTTTT TGCC

    Gene models with high sequence identity

    1. AT1G49960.1 [+] show detail - Xanthine/uracil permease family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SODIUM-DEPENDENT VITAMIN C TRANSPORTER 1.9e-276
    HMMPanther Xanthine/uracil/vitamin C permease 1.9e-276
    HMMPfam Xanthine/uracil/vitamin C permease 8.5e-64

    See the detailed result >

    AT1G49960.1

    Model type
    Protein coding
    Short Description
    Xanthine/uracil permease family protein
    Computational Description
    Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G62890.3); Has 9237 Blast hits to 9206 proteins in 1901 species: Archae - 67; Bacteria - 7526; Metazoa - 351; Fungi - 134; Plants - 458; Viruses - 6; Other Eukaryotes - 695 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR