F16611

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16611

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::deep brown

Original: F16611

Determination of introduced cDNA(s)

RAFL09-13-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-13-G15 - Resource: pda01755

full reading [+] show sequence

AGATTTTGGT TTTGTGTTGA GAACAACTCC AAAGAGACGA GAAGCAGCGA 
ATCGTACGAG CAGAGAGATA TATGTTTCAT TACGTCGATG ATGGATTCTG 
CTTTATATCA TCCTCGAATC TTTTTCGCTC ACAGCTTCAT CAATGGCTTG 
TATAGTTCTC CTAGGTTTGC TAATACTTGC TGGAGATTGG TTAGTCGTTC 
AAGTTGGGAG ATCAAGGCTA GTGAGAATAG TGATCGCAAT GTGTTCGATG 
AAAATCCTGT TAGGAAAACC GACGGGTCGT TGTTTGATTC TGCTTCGTTT 
GAGACAGTTG ACGCGGAAAT CACGCCTGAG ACTGATGATT TCTTCGTGAG 
TGACGCAGAG GGTGATCCAG ATTGTCCTAC TCAAGGTTAT TCCTCTATTG 
AACTTGCTCT TCAAGCTCTA CGCAAAGGAA AGTTTGTGAT CGTTGTTGAC 
GATGAAACCG GAGATGTTGA AGGGAATCTG ATCATGGCTG CAACTCTTAC 
GAGTCCAAAA GACATAGCTT TTCTGATTAA GAATGGTTCA GGTATTGTCT 
CAGTTGGTAT GAAGAAAGAA AACCTTGAAA GATTAAGCCT TACACTTATG 
TCACCTGAAA TGGAAGACGA AGATTCCTCT GCTCCAACTT TCACCATCAC 
TGTGGATGCA AAATCTGGAA CATCAACTGG AGTATCAGCT TCAGACAGGG 
CGATGACGGT TCTTGCACTT TCGTCTCTCG ATGCTAAACC AGATGATTTC 
AGGAGGCCTG GTCATGTATT CCCTCTCAAG TACAGAGATG GTGGAGTTTT 
AAGGAGAGCT GGTCACACCG AAGCTTCAGT GGATCTAATG ATATTGGCTG 
GTTTACGTCC CCTCTCTGTT CTTTCAGCTA TTCTTGATCA AGAAGATGGG 
TCTATGGCTT CACTGCCGTA TATGAAAAAG CTTGCTACGG AACATGATAT 
CCCCATTGTA TCGTTGACTG ATTTAATCAG ATATCGAAGA AAGCGAGATA 
AGCTTGTTGA GAGAATCACA GTGTCTCGTT TGCCTACCAA ATGGGGTCTT 
TTCCAAGCTT ATTGTTATCG ATCTAAACTC GATGGAACCG AAAATATCGC 
CCTCGTTAAG GGAAACGTTG GAAATGGTGA GGACATTCTG GTGCGAGTGC 
ATTCAGAGTG CTTGACAGGA GACATTTTTG GCTCAGCACG GTGTGACTGT 
GGAAACCAAT TGGACTTAGC CATGGAGTTA ATCGAGAAAG AGGGAAGAGG 
AGTTGTTGTG TATCTCCGTG GCCACGAAGG AAGAGGCATT GGCCTTGGTC 
ACAAGCTTAG AGCTTATAAC TTGCAGGACG AAGGACACGA CACTGTTCAG 
GCCAATGTTG AACTTGGCCT ATCCATTGAT TCTCGTGAAT ACGGTATCGG 
TGCTCAGATG CTACGAGACA TAGGAGTGAG AACAATGAGA CTAATGACGA 
ATAACCCTGC CAAATTCACT GGTCTGAAAG GGTACGGACT CGCTGTAGTT 
GGCCGTGTGC CGGTGGTGAC ACCAATCACC AAGGAGAACA GAAGATATAT 
GGAGACCAAA CGCAAGAAGA TGGGTCACAT TTATATCTCT GATAACAACG 
ATCAGCCATT AGCTTGACCC AAAAGCTTTT GATAGAAACA CACACTTTTG 
AATTTTGTAT TTATAAATTG ATTCATTCTT ATGTAATCAT CAACCACAAT 
TACTTTTTTT CTGGAAGATT TGACATAAAA TCGAATTATA GTTTC

Gene models with high sequence identity

AT5G59750.1 [+] show detail - DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	DHBP synthase RibB	7.2e-69
HMMTigr	GTP cyclohydrolase II	4.8e-95
HAMAP	GTP cyclohydrolase II	39.401
HAMAP	RIBBA_MF_01283	49.719
HMMPfam	GTP cyclohydrolase II	3e-74
HMMPfam	DHBP synthase RibB	3e-67
Gene3D	DHBP synthase RibB-like alpha/beta domain	3.2e-67
HMMPanther	GTP CYCLOHYDROLASE II	1.1e-169
HMMPanther	GTP CYCLOHYDROLASE II-RELATED	1.1e-169
superfamily	DHBP synthase RibB-like alpha/beta domain	3.6e-69

See the detailed result >

AT5G59750.1

Model type: Protein coding
Short Description: DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
Computational Description: DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II; FUNCTIONS IN: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase II (InterPro:IPR000926), DHBP synthase RibB (InterPro:IPR000422), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945); BEST Arabidopsis thaliana protein match is: GTP cyclohydrolase II (TAIR:AT5G64300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR