F16617

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16617

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16617

Determination of introduced cDNA(s)

  • RAFL06-89-E03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E03 - Resource: pda07785

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-89-E03 - full reading 
    ACTTCCTTCG TTCTTTTCCT TACCAAAAGA TCCACCTCGA ACCTCTCTCC 
    TCCGTCTTCC TCCGCAGCCG CCGTCACTAT CACCGCAGCT AGAATGAGAG 
    AAGATAATCC AAATTGGTTC CTTAGATGGG AAGAAGAGCT TCCATCTCCA 
    GAAGAACTCA TCCCTATCTC TCAAACCTTA ATCACTCCTC ATCTAGCTCT 
    CGCTTTCCAA ATCGGAAGTC CTAATCATCA TCTCGGATCA AAGAGAACCA 
    CCGCGATTTA TCACCAGAAG CTTCAATCCT CCACCACTCC AACAACTCCA 
    ACTCCAACTC CTCCACCGAT GATGATGAAT TCTGATTTCG GCGGTGGCGA 
    TTCCACGGAT CTTGGTTCAG GATCAATAGG AGGAGAGCCA GCAAGAACGT 
    TGAAACGGCC GCGTCTAGTG TGGACGCCTC AGCTACACAA ACGTTTCGTG 
    GATGCGGTTG GACACTTAGG GATCAAAAAC GCAGTTCCAA AGACTATAAT 
    GCAGCTTATG AGCGTTGAAG GATTGACTAG AGAGAACGTT GCGAGTCATC 
    TTCAGAAATA TCGTCTTTAC CTTAGGAGAA TGCAAGGCGG GAACGGTAAC 
    GGAATCACTG GAGGACACGT CATCGTCTCT GATTCGGCTA CTGATCGGCT 
    ATTTGCTAGC TCACCGGTTC CAGCTCATTT CTTGAGCCCG GATTACTTGA 
    TGCCGCCATT AGAGCATTCG TATATGGGGA AACATGTGAT TACGCAGCAA 
    AACCAAGTGG TTCGTAATCT GAGGTATGAA GATTCGGAAT ATGGTCATGG 
    TAGTATGAAG ATGCTTAAGC TCTTCCCTGC CGGAAATTAA TGAAATATTT 
    GAATTCTTAA CTTCATTTTT ATGGAAGTAA TAATGTTTAA GGTATGTGGA 
    TTATCTCTGT AATTTGCATT TGTCGTCAGG ATCAATAAT

    Gene models with high sequence identity

    1. AT2G40970.1 [+] show detail - Homeodomain-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 1.2e-20
    HMMPfam Myb, DNA-binding 1.6e-12
    Gene3D Homeodomain-related 2.4e-23
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 9.19
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 5.8e-28

    See the detailed result >

    AT2G40970.1

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Computational Description
    MYBC1; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10760.1); Has 1641 Blast hits to 1639 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1614; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR