F16618

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16618

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
T2  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16618

Determination of introduced cDNA(s)

  • RAFL06-07-K18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-K18 - Resource: pda02847

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-K18 - full reading 
    GAGAAACCAC AAATCTCTCT TTCTCTCAAA CTCTCTCAAC AACAACAATG 
    GCGTCTCTTC AACAAACTCT ATTCTCTCTT CAATCCAAAC TCCCACCATC 
    CTCCTTCCAA ATCGCCAGAT CTCTCCCACT CCGAAAAACC TTCCCAATCC 
    GAATCAACAA CGGTGGAAAC GCCGCCGGAG CAAGAATGTC AGCCACCGCA 
    GCATCAAGCT ACGCGATGGC ATTAGCAGAC GTCGCGAAAA GAAACGACAC 
    AATGGAATTA ACAGTCACAG ACATCGAGAA GCTCGAACAA GTCTTCTCAG 
    ATCCACAAGT ACTAAACTTC TTCGCGAATC CAACAATCAC CGTCGAGAAG 
    AAACGTCAAG TCATCGACGA CATAGTGAAA TCGTCGTCTC TTCAATCTCA 
    CACATCTAAC TTCCTCAACG TCCTCGTCGA CGCGAATCGG ATCAATATCG 
    TGACGGAGAT CGTTAAGGAG TTTGAGTTGG TTTACAATAA GCTAACGGAT 
    ACACAATTGG CGGAGGTTAG GTCGGTGGTG AAATTGGAAG CGCCGCAATT 
    AGCTCAGATT GCGAAACAGG TTCAGAAGTT AACCGGAGCT AAGAATGTTC 
    GGGTTAAGAC GGTTATTGAT GCGAGTCTTG TGGCTGGTTT TACGATTCGG 
    TATGGTGAAT CCGGTTCGAA GCTTATTGAT ATGAGTGTGA AGAAACAGCT 
    TGAAGATATT GCTTCTCAGC TTGAACTTGG TGAGATTCAA TTAGCTACTT 
    GAGATTTGGG AAAAATTGTA TAAGAGAAAA ATTTGAGAAT CTTTTTTTTT 
    TGTGCAAGTT TAATTTTTTT TCTCAT

    Gene models with high sequence identity

    1. AT4G09650.1 [+] show detail - ATP synthase delta-subunit gene
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ATPase, F1 complex, OSCP/delta subunit 9.6e-44
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
    HMMPanther ATPase, F1 complex, OSCP/delta subunit 9.6e-55
    superfamily ATPase, F1 complex, OSCP/delta subunit 3e-22
    HMMTigr ATPase, F1 complex, OSCP/delta subunit 1.5e-31
    PatternScan ATPase, F1 complex, OSCP/delta subunit, conserved site 0
    HAMAP ATPase, F1 complex, OSCP/delta subunit 18.373
    Gene3D ATPase, F1 complex, OSCP/delta subunit 8.2e-14

    See the detailed result >

    AT4G09650.1

    Model type
    Protein coding
    Short Description
    ATP synthase delta-subunit gene
    Curator Summary
    Encodes the chloroplast ATPase delta-subunit.
    Computational Description
    ATP synthase delta-subunit gene (ATPD); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: response to cold, defense response to bacterium, photosynthetic electron transport in photosystem I, photosynthetic electron transport in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit, conserved site (InterPro:IPR020781), ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 4372 Blast hits to 4372 proteins in 1436 species: Archae - 0; Bacteria - 2635; Metazoa - 155; Fungi - 114; Plants - 153; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR