F16621

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16621

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16621

Determination of introduced cDNA(s)

  • RAFL05-05-M05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-05-M05 - Resource: pda01028

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-05-M05 - full reading 
    ATCGGTGAGG TTGAGAGTAA TTCACTACAC ACACACAAAA AATAAATTGA 
    GTGCCTCCCC CAAAAACAAA ATTGGTAGAT AACGAGCAAT TGTTTTTTTT 
    CAGATTTGAT CCTGAATTTT TACATTTTTT TTTTTGCAAT CTCCCCCTAA 
    TCTGTTGTTT CTCGCTTCTT CTTCTGTTAA TCATCTGTCT TTCAAAAAGA 
    AAGAAAAAAG AAAAATTCGA TTTCTGGGTT TGTTTTTGTC ATACAGAAAA 
    AAATCAAGCT TATGAATTTG TGTTTAATTT TTTGTTTTAA TTTGAAAGGC 
    AGGTTTTTTC AGAACGAGAT CGTTTTTTCA AATTTCTTCT GATTTTACCT 
    CTTTTTTTCT TCTTAGATTT TAGTGAATCG AGGGTGAAAT TTTTGATTCC 
    CTCTTTTCGG ATCTACACAG AGGTTGCTTA TTTCAAACCT TTTAGATCCA 
    TTTTTTTTTA ATTTTCTCGG AAAAATCCCT GTTTCTTTAC TTTTTTATAA 
    GTCTCAGGTT CAATTTTTTC GGATTCAAAT TTTTATTTTA AATGGCAGCT 
    GCTATGAATT TGTACACTTG TAGCAGATCG TTTCAAGACT CTGGTGGTGA 
    ACTCATGGAC GCGCTTGTAC CTTTTATCAA AAGCGTTTCC GATTCTCCTT 
    CTTCTTCTTC TGCAGCGTCT GCGTCTGCGT TTCTTCACCC CTCTGCGTTT 
    TCTCTCCCTC CTCTCCCCGG TTATTACCCG GATTCAACGT TCTTGACCCA 
    ACCGTTTTCA TACGGGTCGG ATCTTCAACA AACCGGGTCA TTAATCGGAC 
    TCAACAACCT CTCTTCTTCT CAGATCCACC AGATCCAGTC TCAGATCCAT 
    CATCCTCTTC CTCCGACGCA TCACAACAAC AACAACTCTT TCTCGAATCT 
    TCTCAGACCA AAGCCGTTAC TGATGAAGCA ATCTGGAGTC GCTGGATCTT 
    GTTTCGCTTA CGGTTCAGGT GTTCCTTCGA AGCCGACGAA GCTTTACAGA 
    GGTGTGAGGC AACGTCACTG GGGAAAATGG GTGGCTGAGA TCCGTTTGCC 
    GAGAAATCGG ACTCGTCTCT GGCTTGGGAC TTTTGACACG GCGGAGGAAG 
    CTGCGTTGGC CTATGATAAG GCGGCGTACA AGCTGCGCGG CGATTTCGCC 
    CGGCTTAACT TCCCTAACCT ACGTCATAAC GGATCTCACA TCGGAGGCGA 
    TTTCGGTGAA TATAAACCTC TTCACTCCTC AGTCGACGCT AAGCTTGAAG 
    CTATTTGTAA AAGCATGGCG GAGACTCAGA AACAGGACAA ATCGACGAAA 
    TCATCGAAGA AACGTGAGAA GAAGGTTTCG TCGCCAGATC TATCGGAGAA 
    AGTGAAGGCG GAGGAGAATT CGGTTTCGAT CGGTGGATCT CCACCGGTGA 
    CGGAGTTTGA AGAGTCCACC GCTGGATCTT CGCCGTTGTC GGACTTGACG 
    TTCGCTGACC CGGAGGAGCC GCCGCAGTGG AACGAGACGT TCTCGTTGGA 
    GAAGTATCCG TCGTACGAGA TCGATTGGGA TTCGATTCTA GCTTAGGGGC 
    AAAATAGGAA ATTCAGCCGC TTGCAATGGA GTTTTTGTGA AATTGCATGA 
    CTGGCCCAAG AGTAATTAAT TAAATATGGA TTAGTGTTAA ATTTCGTATG 
    TTAATATTTG TATTATGGTT TGTATTAGTC TCTCTGTGTC GGTCCAGCTT 
    GCGGTTTTTT GTCAGGCTAG ACCATGCCAC AGTTTTCATT TTATGTAATC 
    TTTTTTTCTT TTGTCTTATG TAATTTGTAG CTTCAGTTTC TTCATCTATA 
    ATGCAATTTT ATTATGATTA AGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT1G78080.1 [+] show detail - related to AP2 4
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    superfamily DNA-binding, integrase-type 8.2e-25
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 9.3e-18
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 1e-37
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.1e-23
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 23.169
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.1e-11
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.1e-11

    See the detailed result >

    AT1G78080.1

    Model type
    Protein coding
    Short Description
    related to AP2 4
    Curator Summary
    Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling.
    Computational Description
    related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR