F16628

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16628

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16628

Determination of introduced cDNA(s)

  • RAFL09-13-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-13-G15 - Resource: pda01755

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-13-G15 - full reading
    AGATTTTGGT TTTGTGTTGA GAACAACTCC AAAGAGACGA GAAGCAGCGA 
    ATCGTACGAG CAGAGAGATA TATGTTTCAT TACGTCGATG ATGGATTCTG
    CTTTATATCA TCCTCGAATC TTTTTCGCTC ACAGCTTCAT CAATGGCTTG
    TATAGTTCTC CTAGGTTTGC TAATACTTGC TGGAGATTGG TTAGTCGTTC
    AAGTTGGGAG ATCAAGGCTA GTGAGAATAG TGATCGCAAT GTGTTCGATG
    AAAATCCTGT TAGGAAAACC GACGGGTCGT TGTTTGATTC TGCTTCGTTT
    GAGACAGTTG ACGCGGAAAT CACGCCTGAG ACTGATGATT TCTTCGTGAG
    TGACGCAGAG GGTGATCCAG ATTGTCCTAC TCAAGGTTAT TCCTCTATTG
    AACTTGCTCT TCAAGCTCTA CGCAAAGGAA AGTTTGTGAT CGTTGTTGAC
    GATGAAACCG GAGATGTTGA AGGGAATCTG ATCATGGCTG CAACTCTTAC
    GAGTCCAAAA GACATAGCTT TTCTGATTAA GAATGGTTCA GGTATTGTCT
    CAGTTGGTAT GAAGAAAGAA AACCTTGAAA GATTAAGCCT TACACTTATG
    TCACCTGAAA TGGAAGACGA AGATTCCTCT GCTCCAACTT TCACCATCAC
    TGTGGATGCA AAATCTGGAA CATCAACTGG AGTATCAGCT TCAGACAGGG
    CGATGACGGT TCTTGCACTT TCGTCTCTCG ATGCTAAACC AGATGATTTC
    AGGAGGCCTG GTCATGTATT CCCTCTCAAG TACAGAGATG GTGGAGTTTT
    AAGGAGAGCT GGTCACACCG AAGCTTCAGT GGATCTAATG ATATTGGCTG
    GTTTACGTCC CCTCTCTGTT CTTTCAGCTA TTCTTGATCA AGAAGATGGG
    TCTATGGCTT CACTGCCGTA TATGAAAAAG CTTGCTACGG AACATGATAT
    CCCCATTGTA TCGTTGACTG ATTTAATCAG ATATCGAAGA AAGCGAGATA
    AGCTTGTTGA GAGAATCACA GTGTCTCGTT TGCCTACCAA ATGGGGTCTT
    TTCCAAGCTT ATTGTTATCG ATCTAAACTC GATGGAACCG AAAATATCGC
    CCTCGTTAAG GGAAACGTTG GAAATGGTGA GGACATTCTG GTGCGAGTGC
    ATTCAGAGTG CTTGACAGGA GACATTTTTG GCTCAGCACG GTGTGACTGT
    GGAAACCAAT TGGACTTAGC CATGGAGTTA ATCGAGAAAG AGGGAAGAGG
    AGTTGTTGTG TATCTCCGTG GCCACGAAGG AAGAGGCATT GGCCTTGGTC
    ACAAGCTTAG AGCTTATAAC TTGCAGGACG AAGGACACGA CACTGTTCAG
    GCCAATGTTG AACTTGGCCT ATCCATTGAT TCTCGTGAAT ACGGTATCGG
    TGCTCAGATG CTACGAGACA TAGGAGTGAG AACAATGAGA CTAATGACGA
    ATAACCCTGC CAAATTCACT GGTCTGAAAG GGTACGGACT CGCTGTAGTT
    GGCCGTGTGC CGGTGGTGAC ACCAATCACC AAGGAGAACA GAAGATATAT
    GGAGACCAAA CGCAAGAAGA TGGGTCACAT TTATATCTCT GATAACAACG
    ATCAGCCATT AGCTTGACCC AAAAGCTTTT GATAGAAACA CACACTTTTG
    AATTTTGTAT TTATAAATTG ATTCATTCTT ATGTAATCAT CAACCACAAT
    TACTTTTTTT CTGGAAGATT TGACATAAAA TCGAATTATA GTTTC

    Gene models with high sequence identity

    1. AT5G59750.1 [+] show detail - DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr DHBP synthase RibB 7.2e-69
    HMMTigr GTP cyclohydrolase II 4.8e-95
    HAMAP GTP cyclohydrolase II 39.401
    HAMAP RIBBA_MF_01283 49.719
    HMMPfam GTP cyclohydrolase II 3e-74
    HMMPfam DHBP synthase RibB 3e-67
    Gene3D DHBP synthase RibB-like alpha/beta domain 3.2e-67
    HMMPanther GTP CYCLOHYDROLASE II 1.1e-169
    HMMPanther GTP CYCLOHYDROLASE II-RELATED 1.1e-169
    superfamily DHBP synthase RibB-like alpha/beta domain 3.6e-69

    See the detailed result >

    AT5G59750.1

    Model type
    Protein coding
    Short Description
    DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
    Computational Description
    DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II; FUNCTIONS IN: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase II (InterPro:IPR000926), DHBP synthase RibB (InterPro:IPR000422), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945); BEST Arabidopsis thaliana protein match is: GTP cyclohydrolase II (TAIR:AT5G64300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR