F16639

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16639

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16639

Determination of introduced cDNA(s)

  • RAFL08-12-E11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-E11 - Resource: pda17583

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-12-E11 - full reading
    CGGTGTACCA ATGAAGCCCA CGACCAATGG TGGGCTCTTG GCTTCTCAAT 
    CATCTTCCTC CTTCTCGTTT CCGAGATTCC GCGGCCAACT TCCGATTATC
    TTCTCAGCCA ATAATAATCA GAAGAAGAAG AATCTTCCAA ATCCAAACGT
    CGTCACTCTT TGTCTCCACT CTCATTCCAA TGTCTCCTCC TCTCAAATCG
    CCGTCACTCG CCGCGCAATT CTCGTCGCAC CACCGCTCCT CGCCGCCGCC
    GCTTCGTTGT TTCTCTCTAT TTCCTCAGCT GCCTCTGCTG AGACTTCTGC
    GGAATCAGTA GCTCTTCCTC CTGTTGCTAC TGCTCCTCCT CCTCCGCCTG
    TGGAGAAGGA AGAGGCGATA ACTTCTAGAA TCTATGACGC GTCTGTGCTT
    GGTGAGCCGA TGGCTGTTGG GAAAGATAAG AAGAGAGTGT GGGAGAAGCT
    ATTGAATGCG AGGATTGTCT ATCTCGGAGA AGCAGAACAA GTGCCTACAA
    GAGACGACAA GGTTCTCGAG CTCGAAATCG TGAGGAATTT GAGGAAGCGA
    TGTATTGAGA GCGATCGTCA GTTATCTTTA GCATTGGAAG CATTTCCTCT
    TGATTTGCAG GAACAGTTAA ACCAATACAT GGACAAGAGG ATGGATGGAG
    AGGTATTGAA GTCGTATGTA TCACATTGGC CAGTCCAACG TTGGCAAGAG
    TATGAGCCTC TCTTAAGTTA CTGCCGCGAT AACGGAGTTA AACTCATTGC
    TTGTGGCACT CCGCTCAAGG TTTTAAGAAC TGTCCAAGCT GAGGGTATCC
    GTGGTCTATC AGAGTCTGAG CGTAAATTAT ACACTCCTCC TGCGGGTTCA
    GGGTTTATCT CAGGGTTTAC TTCCTTCTCA CGTAGTTCTT CACTCAATAT
    GAATCCACTC ACACAGATTG TTCCATTTGG ACCGAGTTCT TATTTGTCGG
    CACAAGCTAG AGTTGTTGAA GACCATACAA TGTCTCAAGT TATTGTACAA
    GCAGTTGCAG ATGGAGGTGG AACTGGTATG CTGGTAGTGG TGACAGGGGC
    AAACCATGTT GAGTATGGGT CAAGGGGAAC AGGATTGCCG GCAAGGATCT
    CTAGGAAGAT TCCGAAGAAA AGTCAACTTG TTGTGTTACT TGATCCTGAA
    AGACAGTTTT TGCGGAAAGA GGGTGAATCT CCAGTTGCTG ATTTCTTGTG
    GTATTCTGCG GCCAGACCCT GCAGCAGAAA CTGCTTTGAC CGAGCAGAAA
    TCGCTCGGGT AATGAATGCG GCTGGTAGGA GACGAGATGC CCTTCCCCAA
    GACATTCAAA AAGGATTAGA CCTTGGTCTG GTGTCACCTG AGATTCTGCA
    GAATTTCTTT GATTTGGAGC AATATCCTCT TATTTCAGAG CTTACACAAC
    GGTTCCAGGG ATTCCGAGAA AGGTTGTTGG CAGATCCCAA ATTCTTGAAT
    AGATTAGCTA TTGAAGAAGC TATATCAATA ACAACAACAC TTGTAGCTCA
    ATATGAGAAG CGGAAAGAAA ATTTCTTTGA AGAACTCGAC TATGTGATCA
    CTGATAGCGT AAGAGCATCA GTTGTTGATT TTTTCACAGT TTGGCTCCCT
    GCACCAACCT TGTCTTTTAT CTCATATGCT GATGAGACAA TTGGGCCAAA
    CAGCATAGAT GCCTTAAGAG GCCTCCTAGG GTCCATACCT GACAATGCAT
    TTCAAAAAAG TCTAGGTGGA CAAGAGTGGA CTCTGAGTCT TAGGATTGCT
    TCAGTTATTA TCGGTGGCTT GAAGCTTGCT GGTGTTGGAG TTGTTTCCAG
    TTTTGCAGCT GTGGGATCTT CAAATGCTTT GTATGCAATA CGAAAATTCA
    TTAAACCAGA GTTGGGTGTT GGTGAGCAAG CAAAGAGGTC TCCTATGCTG
    AAGACGGCCC TTGTGTATGG AGGTTATCTG GGAACATCTT CGAATATCCG
    TTATCAGGTA ATTGCTGGGT TAATAGAGCA TCGCATTTCT GACGAGCTTT
    CTTCTCAACC TCTACTTGTA AACATGATTT CATTTGTTGT TCGAGTAGCT
    AACTCCTACT TTGGAACTCA GCAATGGATT GATCTTGCGC GCTCTACGGG
    TCTGCAAACT CAGAAAAGTG TCACAACTTC CAACCAAATC CCCGAGGTTG
    CGAGCCAATC CACAGTGGAA TACAGTACAA CTGAAGAGGC AAGTATGGAT
    GATCTTAAGA ATCAATGAGA TTTATGCGGC TATGTGACTA GGTACCAATT
    GTATATGTTT ATAAAAGCTT TTGATCGTAT TGGAGGGAAA GATATATTCA
    TTTGAGTTGT ATTTTTGTAT CTTAGCTTAC GGGAAACAAT GATTCGTGAA
    TAAAATTTCT TCAATTAGTC AAAAAA

    Gene models with high sequence identity

    1. AT2G40400.1 [+] show detail - Protein of unknown function (DUF399 and DUF3411)
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF3411 2e-59
    HMMPfam Protein of unknown function DUF399 8.5e-43

    See the detailed result >

    AT2G40400.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF399 and DUF3411)
    Computational Description
    Protein of unknown function (DUF399 and DUF3411); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT3G56140.1); Has 496 Blast hits to 496 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR