F16747

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16747

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16747

Determination of introduced cDNA(s)

  • RAFL05-14-J18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-J18 - Resource: pda02602

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-J18 - full reading 
    ACGAAAAAAG GAAATAGAAA AAAAAAGAAG AGAACAAATC TTTTTGATCT 
    GTGCGTATGG TTGTTGTGTC TCTTCTTCCT CGAATCTCGA TCGTTACATC 
    ACCGGGTTCT AGCCTTCACG ATGTGCTTTT GAGCATGAGA TTTGGTTTGA 
    CGCGACATCT CCCTCTCAAA CGATCTTTCT CCAATTATTC AATCACTTCC 
    GTATCTCCAG AACAACAGCT CAAATCTCCG GTGACCATGG CGACGACCGA 
    GAGCAAGAAT CTTGTAGAAG CTTCCAAGGA GGAGACAAAC AAGAAGGAGA 
    CAGAAGATAA GAAGGAGGTG GGAGTTTCGG TTCCTCCACC GCCAGAGAAA 
    CCAGAGCCTG GCGATTGTTG CGGTAGCGGT TGCGTCCGAT GCGTTTGGGA 
    TGTTTATTAC GATGAGCTCG AAGATTACAA CAAGCAGCTT TCTGGAGAAA 
    CTAAATCAAT TTGACTGATT TTTCCTCGCA TTGTTAATGG AGAAATTAAA 
    CATTTGTCTT TGTCGATTTG ATGATACAGT GCTTTTGTTG AACAAC

    Gene models with high sequence identity

    1. AT5G17280.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Oxidoreductase-like, N-terminal (InterPro:IPR019180); Has 1807 Blast ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G17280.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Oxidoreductase-like, N-terminal (InterPro:IPR019180); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR