F16802

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16802

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16802

Determination of introduced cDNA(s)

  • RAFL07-08-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-08-L08 - Resource: pda03989

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-08-L08 - full reading 
    ATTTTGTAAA GTTTTTTTTT TCCCAAATAG TACTTTTTTT TTGTTTGGCC 
    TTCTTATAGA AAGAAGAACT CAAAGCACAG AGAGAAGATG AGCGAAGAAC 
    AACCACACGC CAATCTAGCG GTTCCCGCGT TTAAAACTGA GAAAGAGCCC 
    ATAACGCAAA CACGAAATGG TCAAAGTAGC GTTTGGCGTT TCGGTGGAAG 
    TGATAAGGCA GCGAAAGCAT CCACCGTAAC GCTTAGAGGT GTCATCTACA 
    TGCTCTTCGA CAACTGCGGC AAAGACGTCA ATAAGACCAT TTTACCCCTC 
    GGCCACGGTG ACCCTTCCGT CTACCCTTGC TTCCGTACCT GTATCGAAGC 
    TGAAGACGCC GTCGTCGACG TCCTTCGCTC CGGCAAAGGC AATTCTTACG 
    GTCCCGGAGC TGGGATTCTC CCCGCAAGAC GAGCCGTTGC TGATTATATG 
    AACCGAGATC TTCCGCACAA GTTAACGCCT GAAGATATTT TTCTGACCGC 
    TGGATGCAAC CAAGGGATAG AGATCGTGTT CGAATCGTTG GCTCGACCAA 
    ACGCAAACAT CTTGCTCCCA CGTCCTGGCT TCCCTCACTA CGACGCTCGT 
    GCTGCTTACA GTGGTCTCGA GGTTCGCAAG TTTGATCTTC TTCCCGAGAA 
    AGAATGGGAG ATTGATCTTG AAGGTATCGA AGCCATTGCA GACGAGAACA 
    CTGTGGCTAT GGTTGTAATT AACCCCAACA ATCCCTGTGG AAATGTCTAC 
    TCTCACGACC ATCTCAAAAA GGTTGCAGAG ACGGCTAGGA AGCTCGGGAT 
    AATGGTGATC TCAGACGAAG TATATGACCG AACTATATTC GGAGACAATC 
    CATTTGTTTC AATGGGGAAG TTTGCTTCGA TAGTCCCTGT ATTGACACTA 
    GCAGGCATAT CTAAGGGATG GGTTGTTCCT GGATGGAAAA TTGGCTGGAT 
    CGCCTTGAAT GATCCCGAGG GCGTTTTCGA GACCACCAAG GTGTTACAAT 
    CCATCAAACA GAATCTTGAC GTAACTCCTG ACCCTGCCAC AATAATTCAG 
    GCTGCACTTC CAGCGATCCT GGAGAAAGCG GACAAAAACT TCTTTGCAAA 
    GAAGAACAAG ATACTCAAAC ATAATGTTGA TTTGGTGTGT GATAGGCTCA 
    AGGACATCCC CTGTGTCGTC TGTCCCAAGA AACCTGAGTC TTGCACTTAC 
    TTATTGACAA AGTTGGAGCT GTCATTGATG GATAATATCA AGGACGATAT 
    AGATTTTTGC GTAAAACTGG CCAGAGAGGA GAATCTCGTG TTTCTACCAG 
    GGGATGCTCT GGGTTTGAAG AACTGGATGA GGATAACCAT CGGAGTCGAA 
    GCTCATATGC TTGAGGATGC ACTTGAGAGA CTGAAGGGTT TCTGTACACG 
    TCATGCCAAG AAGACAGAGA CAGAAACTGA GTCACTTCAA GCTTTGAAAC 
    TGAGTGATAA TAATCTCGAA ATGTAAAACA GAAGAGGATG TGTGTGCCCA 
    AAAGAATATT CTTATGATAG ATAATTTTGA TTCTTGCTTT TCCATTTGAT 
    TTCCCAAAGT ATTTGATTAT CTACATTAAT AAAAACTATG GTTATTTGTC 
    AAATAGCAAT ATTGGGAACA TAAATGAAGG ATCTAGCATC CATGAAAGAG 
    AATTTCTTTG TTTTTGGAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT2G20610.1 [+] show detail - Tyrosine transaminase family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aminotransferase, class I/II 9.8e-53
    HMMPIR Tyrosine transaminase 0
    HMMTigr Tyrosine/nicotianamine aminotransferase 7.4e-302
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 4.5e-53
    HMMPanther TYROSINE AMINOTRANSFERASE 2.2e-218
    HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 2.2e-218
    superfamily Pyridoxal phosphate-dependent transferase, major domain 2.1e-80
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 8.1e-10
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 8.1e-10
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 8.1e-10
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 8.1e-10

    See the detailed result >

    AT2G20610.1

    Model type
    Protein coding
    Short Description
    Tyrosine transaminase family protein
    Curator Summary
    Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.
    Computational Description
    SUPERROOT 1 (SUR1); FUNCTIONS IN: S-alkylthiohydroximate lyase activity, carbon-sulfur lyase activity, transaminase activity; INVOLVED IN: regulation of cell growth by extracellular stimulus, glucosinolate biosynthetic process, adventitious root development, indoleacetic acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT4G28420.2); Has 40950 Blast hits to 40944 proteins in 3034 species: Archae - 1011; Bacteria - 29323; Metazoa - 781; Fungi - 784; Plants - 1326; Viruses - 0; Other Eukaryotes - 7725 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR