F16822

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16822

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16822

Determination of introduced cDNA(s)

  • RAFL05-04-C24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-C24 - Resource: pda00827

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-04-C24 - full reading 
    GGATAACCCT CAAGAAGAAG CTGCTGAAGA AGAAACCTCA TCCTTCGAAC 
    GTTAAGAGGA AGAAGAATAA GAGAAATCGA TTCGTGGTTT TGGGAAAATT 
    CAATGGCGGT TTCTACTGTA TCGTCGTTTC TATTGCCATC TTTCGGCATT 
    CCAAGCTCTT CGCCTTCTTC TACCAGACTC AAAGTCTCTC TGCTGCCTTC 
    ATCTTCTACC CATGGCGGCC TTAGTTCCTG CGTCCTTACG AAACCATCCG 
    TCTCGCTTAC GAAGGTCTTC GCTGTTCCCG ATACCCTAGA TCCAACTCCA 
    GAAATTCTCG ATGAACCCGC CTCTGAGGTT CCGAGCTCTT CATCCATCAG 
    TGTAGACGCG GATAAGATGG CGCCAAAGCA AAAGATTAGG ATCAAGCTTA 
    GATCATACTG GGTGCCTCTT ATTGAGGACT CATGCAAGCA GATACTTGAT 
    GCTGCGAGAA ACACCAATGC AAAGACGATG GGTCCTGTTC CATTGCCAAC 
    CAAGAAGCGT ATCTACTGTG TTCTCAAGTC TCCTCACGTT CACAAGGATG 
    CTAGGTTCCA TTTTGAAATC CGGACACACC AGCGCATGAT TGATATTCTC 
    TACCCGACTG CTCAAACTAT CGATTCTTTG ATGCAACTTG ATCTTCCTGC 
    TGGTGTCGAT GTGGAAGTGA AGCTCTGAAG AAGAAGCGTA ACTACAATGA 
    TGTGATGGGC ACTTTTGCAT TGAATGAACA GACTGTTTCA GATCAACTAC 
    ATTGCTTAGA ACTGGTAAGC CTTGTATCAT CTTTTTTGAG AACCTTTGTA 
    ACGAAAATGT AAGTTGTATT ATCTGGTCCT TGGAATCTAT CTTTAGCGAT 
    GCTTGGTTCT TAGTTGATGA ACATATCCTT AATTAAGCAA GTTCAAAGGA 
    ATTTGTTTTT GTTTTACTAA TTGTTATAC

    Gene models with high sequence identity

    1. AT3G13120.1 [+] show detail - Ribosomal protein S10p/S20e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein S10 subgroup 1.4e-59
    HMMPanther Ribosomal protein S10 1.4e-59
    PatternScan Ribosomal protein S10, conserved site 0
    Gene3D Ribosomal protein S10 3.6e-34
    FPrintScan Ribosomal protein S10 0.000000000000014
    FPrintScan Ribosomal protein S10 0.000000000000014
    FPrintScan Ribosomal protein S10 0.000000000000014
    HMMTigr Ribosomal protein S10 subgroup 3.7e-59
    HAMAP Ribosomal protein S10 subgroup 26.115
    superfamily Ribosomal protein S10 2.4e-33
    HMMPfam Ribosomal protein S10 1.4e-35

    See the detailed result >

    AT3G13120.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S10p/S20e family protein
    Computational Description
    Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10 subgroup (InterPro:IPR005731), Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10 (InterPro:IPR001848); Has 8443 Blast hits to 8443 proteins in 2902 species: Archae - 264; Bacteria - 5393; Metazoa - 337; Fungi - 182; Plants - 190; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR