F16846

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16846

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16846

Determination of introduced cDNA(s)

  • RAFL06-78-I09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-78-I09 - Resource: pda03733

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-78-I09 - full reading 
    ACCCAGTCTG GAGTCTGGCC ATTGGGATTA AACTAACTTC TCATTCTCAT 
    TCCACCTTCT TCTTCTTTGT TCTTGTGTGC TACTAAAAAT CAAGAAAGCA 
    CAAGGAGACA AATAAACCTA TCCATTTCAT TACCAAACAA GCCGTACATT 
    CTCTAGTTAT GGCTTCTTCT TCTTCTTCTT CTTCAACTAC TTCAACCATC 
    ACATCCAAAT TTATTGGGCT TATGCTTCTT CTCTCTCTTC AACTAGACTT 
    ATTACTCGGA TCAGCTATTC ATCTTAAAAA CCAAACTTCA TTCAGACCCA 
    ACAGGGAGAT TCAGAAGCTT AGAAGAGTGG AAGCATATCT CAGCAAAATC 
    AACAAACCTT CCATCAAAAC AATCCACAGC CCAGACGGAG ATGTAATAGA 
    ATGTGTACCG TCTCATTTAC AACCCGCATT TGATCATCCT CAGCTACAAG 
    GCCAGAAACC ACTTGACTCA CCTTACAGGC CAAGTAAAGG AAATGAAACA 
    ACATATGAGG AAAGTTTTAA TCAGTTATGG AGTATGTCCG GTGAAAGTTG 
    TCCAATTGGG TCAATACCAA TTAGAAAAAC AACAAAGAAT GATGTTTTAA 
    GGGCAAATTC AGTTCGACGG TTTGGTCGGA AATTAAGAAG ACCCATTAGA 
    CGAGATTCAT CCGGAGGTGG TCACGAGCAT GCGGTGGTGT TTGTAAATGG 
    AGAACAATAC TATGGAGCTA AAGCAAGCAT TAACGTGTGG GCGCCACGTG 
    TCACTGATGC TTATGAGTTT AGTTTATCTC AGATTTGGCT CATCTCTGGA 
    TCCTTTGGTC ATGACCTAAA CACCATTGAA GCTGGTTGGC AGGTTAGTCC 
    TGAACTATAC GGAGATAATT ATCCAAGATT CTTCACATAT TGGACGACTG 
    ATGCATACCA AGCAACTGGG TGCTACAATT TACTCTGCTC TGGATTCGTA 
    CAAACCAACA ATAAAATTGC AATTGGTGCA GCGATTTCCC CGAGGTCCTC 
    TTATAATGGA AGACAGTTTG ATATCGGTTT AATGATTTGG AAGGATCCAA 
    AACATGGGCA CTGGTGGCTT GAACTAGGGA ATGGACTTCT TGTGGGATAC 
    TGGCCAGCTT TCTTGTTCAG TCACTTGAGG AGTCATGCAA GTATGGTACA 
    ATTTGGCGGC GAAGTTGTGA ACAGCCGATC AAGCGGTGCT CACACCGGAA 
    CACAGATGGG AAGCGGCCAT TTCGCAGATG AAGGGTTTGA GAAAGCTGCC 
    TACTTTAGGA ATTTACAAGT TGTTGACTGG GACAACAATC TCTTGCCTCT 
    GAAGAATCTC CATGTCTTGG CCGATCACCC CGCTTGTTAT GACATCAGAC 
    AAGGCAAAAA CAATGTATGG GGGACTTATT TTTACTATGG AGGGCCTGGT 
    CGGAACCCAA GGTGTCCTTG ACTCACCCAA ACAGAAATAT AAAAAATATT 
    TGATGTGAAT TTATGTTATT TTTCTGTTAC TAGATTTTTT TATTTCTTCT 
    TAGATTTTTT TTTTTTTGGT GTTTGTAAGG CTGTTACTAA TAAAACAGTT 
    TGTGGTTCTA CTGTATTTTT TTGACGTGAT GAAATAGATA ACTTTTAT

    Gene models with high sequence identity

    1. AT5G50150.1 [+] show detail - Protein of Unknown Function (DUF239)
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    See the detailed result >

    AT5G50150.1

    Model type
    Protein coding
    Short Description
    Protein of Unknown Function (DUF239)
    Computational Description
    Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR