F16847

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16847

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F16847

Determination of introduced cDNA(s)

  • RAFL05-16-P20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-P20 - Resource: pda03031

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-P20 - full reading
    CTTCACAATC CTCATAATCA CTTTCGAAAT TACATTTACG CTTTCTTGCA 
    ATCAAATTTT CCGATCTTAA GTTCAGAAGA CGATGTCAGA GGTGGAAATA
    GAGAACGCTG CTACGATCGA AGGAAACACC GCTGCGGATG CGCCGGTGAC
    GGATGCGGCC GTTGAGAAGA AGCCTGCAGC GAAAGGACGA AAGACGAAGA
    ATGTTAAGGA AGTGAAGGAG AAGAAGACTG TTGCTGCCGC TCCGAAGAAG
    AGAACTGTTT CATCTCATCC TACTTACGAA GAGATGATTA AGGATGCGAT
    TGTTACGTTG AAAGAGAGAA CTGGATCTAG CCAATACGCG ATTCAGAAGT
    TCATCGAGGA GAAGCGTAAG GAGCTTCCTC CAACATTCAG AAAGCTGTTG
    CTTCTCAATC TGAAGAGACT CGTTGCTTCT GGGAAGCTTG TGAAGGTCAA
    AGCCTCGTTT AAACTCCCAT CGGCGTCGGC TAAAGCATCA TCCCCTAAGG
    CGGCAGCGGA GAAATCTGCT CCTGCGAAGA AGAAACCGGC GACTGTGGCG
    GTTACCAAGG CGAAGAGAAA GGTCGCTGCG GCTTCCAAGG CTAAGAAAAC
    AATCGCCGTT AAACCTAAGA CTGCTGCTGC TAAGAAAGTG ACCGCGAAGG
    CTAAGGCTAA GCCCGTTCCT CGTGCCACTG CTGCTGCAAC TAAGAGGAAA
    GCTGTTGATG CGAAGCCCAA GGCTAAGGCT AGACCAGCCA AGGCAGCCAA
    AACGGCCAAG GTTACATCTC CGGCTAAGAA AGCTGTTGCT GCCACGAAGA
    AAGTTGCTAC GGTGGCCACA AAGAAGAAGA CTCCGGTTAA GAAGGTTGTG
    AAGCCAAAGA CGGTTAAGTC TCCAGCAAAG AGGGCTTCTT CTAGGGTTAA
    GAAGTGAAGT TAGGGTTTGT AGGTAGAAGA ATGGTTAACG ATAGTTTAGA
    CTTGTATAAT TCAATCATCT TTATGCGACT TTGTTTGCTT TTCTTCTTTC
    AGTGTTCTTG TTATTCACAG TTCCTTTGGA CTACCCCTTA AATCATATAT
    AGATTTCATC AATGAAGCAA AAAG

    Gene models with high sequence identity

    1. AT1G06760.1 [+] show detail - winged-helix DNA-binding transcription factor family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily "Winged helix" DNA-binding domain 3.7e-24
    FPrintScan Histone H5 2.9e-09
    FPrintScan Histone H5 2.9e-09
    FPrintScan Histone H5 2.9e-09
    HMMPfam Histone H1/H5 2.5e-23
    HMMSmart Histone H1/H5 9.7e-34
    HMMPanther HISTONE H1/H5 9.1e-38
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 5.8e-21

    See the detailed result >

    AT1G06760.1

    Model type
    Protein coding
    Short Description
    winged-helix DNA-binding transcription factor family protein
    Computational Description
    winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 20265 Blast hits to 10904 proteins in 1494 species: Archae - 37; Bacteria - 8386; Metazoa - 4718; Fungi - 1128; Plants - 980; Viruses - 120; Other Eukaryotes - 4896 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR