F16905

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16905

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16905

Determination of introduced cDNA(s)

  • RAFL08-10-P05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-10-P05 - Resource: pda04627

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-10-P05 - full reading 
    AACGATATAA ACACATATGT ATATGGTTTT CGACCTCTCT TCTCCAAAAC 
    CATCACAGAG AGAGTCGCCG AAATAAATTG AAATCCGGTG AGAAGATTTT 
    GGATTCACTC CTTCCTTCTT TCTTCTTCTT TATCATCATT TGAGCTGGTT 
    TTGGTATCTC TCCTGACGAA TTTGAATCTC TCAGCCATTT TCTCTTCTCG 
    CATCTGTGTT TTCGTGCTTG GAGCTGTACA CGTTTCTTTA ATTTGAATAG 
    TGATTTTGCG TTCGTTAATT AGCCTTCTCG TACGAGTGGG CTATTTTGGG 
    AATGATTTAG GTGGTTTTAA GTTACTGGGT AGTAGTCACT GCTGAGCGAT 
    TTCTGTTTCT CCTGTTGAAT GATTGATTCA GAAATTTGAA ATTCACATCG 
    AAACCAAATC TTAAATCATA TTGGTAGCTT TTTTTTTGTT TTGTGATTAG 
    ATACTGTTTT TTTATAGTAT TAAATTCGTT TTGGTGTGAG TGATTTAGTG 
    TTTGGGAAAT TATTTAATTT AGTGGTTATT TTCTGATTTA GTGATGATTT 
    GAGAATTTTG TGTTGTTTAT ATTCTTGGTA GCGGGAAATT TGTACTTTCC 
    TTTGTGGACC TTTCAACTAT TGAATGTGGA AGATTTGCTG AGAATCTTAG 
    AAAGTCATCA TCATCCATAC GTAAGAGAAC TTTTTTTTAG CTTGAGAGTG 
    ATTTTCAGAT GGAGAATGGG TTATGGGAGG TTTTAGGTTC AAAAGGGTTG 
    TTGAAGAAAC ATGAATTCAT TAGGATTTTG GTTCAATGCT TATACTCGTT 
    AGGATTCAAG AACTCTGCTT CTTGTCTGGA ATTCGAGTCA AAGATCTTGT 
    ATAAAACAGC TGATTCTGAG TTTCTTGAAA AGCAAGTTTT GAGTGGGAAC 
    TGGGATAGTT GCGTACAGGT TCTAGACAGA ATTTTTGATA ATTCCATGGA 
    TGATACGAGG AACACGGCTT TATATCTAGT GTTCAAGCAA TGTTTGTTGG 
    AGTATTTGAA ACGTGGGGAT GTTTCTTTGG CCTTGAATGT GTTACGGAAG 
    CAAGCTCCGT TGTTACGGAT GGGAAAAGAG AAGATTCATA GGCTTGCTTG 
    TGATATTGTT TATTCGAAAG AGATGGAATC CGGTGAAGTA GACAACTGTT 
    TAGTTCTAGA TTTGAGGAGA AAGTTGTTGG TTGAACTGGA GAAGTTGATT 
    CCCTTGCCAA TTGTTATTCC TGAGAGAAGG TTGGAACATT TGGTTGAGAC 
    TGCTGTGATG GACCAGATTG ATACGTGTAT GTATCATAAC TCATGTGATG 
    CAGTATCGCT TTACAAGGAT CACTGTTGCG GTAGAGACCA AATTCCTTCA 
    GAGACAGTCC AGATTTTGGT GGCACACAAA AATGAAGTGT GGTTTGTGCA 
    ATTCTCTAAT AGTGGCAAAT ATCTGGCCAC TGCATCAAGC GATTGTACAG 
    CTATAATATG GAAGGTACTG GATGACAACA AAGTCGAACT GAAGCACACA 
    CTTGAGAGCC ACCAAAATCC AGTTTCTTTT GTCTCGTGGA GTCCTGACGA 
    TACTAAACTG CTTACATGCG GAAACGCTGA GGTTCTTAAG CTATGGGATG 
    TTGACACAGT TCTGACCCAG AAAGAGGGAT TGTAATGTGG GACACTGATG 
    GAAACGAGAT CAAAGCCTGG AGAGGAACGA GAATTCCAAA GGTGGTGGAT 
    TTGGCTGTGA CGCCGGATGG CGAGAGTATG ATTACAGTGT TTTCGGATAA 
    AGAGATCCGG ATCTTGAATT TGGAGACAAA AGTCGAACGT GTTATCTCTG 
    AGGAACAGCC AATTACTTCC CTTTCAATTT CTGGTGATGG TAAGTTTTTT 
    ATAGTCAACT TGAGCTGCCA AGAGATACAT CTTTGGGATC TTGCTGGAGA 
    GTGGAAACAA CCATTGAAGT TCTCGGGTCA CAGGCAGAGC AAATACGTGA 
    TACGGTCATG TTTTGGTGGG TTGGATAGTT CGTTCATCGC CAGTGGAAGT 
    GAGGATTCAC AGGTTTACAT ATGGAATCTA AAGAACACAA AGCCGCTTGA 
    AGTGTTATCA GGTCATTCGA TGACCGTAAA CTGTGTAAGC TGGAACCCGA 
    AAAATCCTCG GATGCTAGCC TCTGCTAGTG ATGACCAAAC CATCCGTATT 
    TGGGGACCGG GCAAACCGAA CAAACCACTG AACTGATTAG ATAACCAGAA 
    ACCGTAGTAG CTTTAAACCA GGACCTAGTT CTAGTAGTTC CACATTTGTG 
    TATAGTTCAT TTCTGGTTTT TTCTTTTTTG GTGGTCCTTA TTGGCTTTGC 
    AGAACAATCT CTTGCTTTTT GAGTTTTGGT ACACTGGTTT TGGAGAACTT 
    GATTTGAGAT GAGCCATGAA TTGAAACCAA ACCGGTTTAG GCGGTAAACT 
    GAACCAAGCT GTGTTGAGGA GTTAGGTGGC AATTGTTTGG TGTTCAGAGC 
    AAAACTTAGC TAACTACTTG TTTCGTTGGT CATTTGCTAC CATGTGGGTT 
    CCCCGTTATT TTAAACAGAA AATTTAATTA TAATATAAAC TTCGGAAACG 
    CCCTTAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G43920.1 [+] show detail - transducin family protein / WD-40 repeat family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 2.1e-21
    superfamily WD40 repeat-like-containing domain 1.1e-34
    HMMPanther WD REPEAT PROTEIN 26-RELATED 2.3e-71
    HMMPanther WD REPEAT PROTEIN 26-RELATED 1.5e-91
    ProfileScan WD40 repeat 2 11.845
    ProfileScan WD40 repeat 2 12.547
    ProfileScan WD40-repeat-containing domain 18.985
    ProfileScan LisH dimerisation motif 8.631
    ProfileScan CTLH, C-terminal LisH motif 11.444
    ProfileScan WD40 repeat 2 10.074
    ProfileScan WD40 repeat 2 14.251
    ProfileScan WD40-repeat-containing domain 20.804
    HMMSmart CTLH, C-terminal LisH motif 7.8e-09
    HMMSmart WD40 repeat 6.6e-08
    HMMSmart WD40 repeat 3e-07
    HMMSmart WD40 repeat 16
    HMMSmart WD40 repeat 1.2
    HMMSmart WD40 repeat 0.048
    HMMSmart WD40 repeat 1.3e-10
    Gene3D WD40/YVTN repeat-like-containing domain 3.1e-20
    Gene3D WD40/YVTN repeat-like-containing domain 5.7e-31
    HMMPfam WD40 repeat, subgroup 8.3e-09
    HMMPfam WD40 repeat, subgroup 3.2e-06
    HMMPfam WD40 repeat, subgroup 0.0013
    HMMPfam WD40 repeat, subgroup 2e-12
    PatternScan WD40 repeat, conserved site 0

    See the detailed result >

    AT5G43920.1

    Model type
    Protein coding
    Short Description
    transducin family protein / WD-40 repeat family protein
    Computational Description
    transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G08560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR