F16925

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16925

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16925

Determination of introduced cDNA(s)

  • RAFL09-86-D02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-86-D02 - Resource: pda08947

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-86-D02 - full reading
    AGTGCGACTT TGCCTCTTTT CAATGCCCAA TTTCTTGAGA TTCTGGCTGT 
    TCTGCATCCA AATATTAAAC AATCAATTCC TTTTATAAAA AGCAAAAGAC
    AGAAATATTT ATTATTAAGC TAAAGAATTG ATCAAAAAAC TCGATTCACT
    TTTCTCAAAA ACCCGAATAT AATCTCATTC CCAATAGCTT CCACTTCCAT
    CGAGAGATTT TCTTTCTTTG TTTTTTTCTG TGATTTTCTC CAATGGCTAA
    CTCCAAGAAG CAAGCATGGT TTTTTTATAC CACAGGCTTA CCAAGTGACA
    TAGAAATCGA AGTTGATGAT ATAACATTTC ATCTTCATAA GTTTCCTCTA
    ATGTCAAAAA GCAAAAAACT TCACCAACTA ATAACAGAGC AAGAACAGAG
    TAAAGTTTAT TCTCACATCA AGCTCGAGAA TTTTCCAGGA GGTTCAGAGA
    TTTTCGAGAT GGTGATAAAG ATAAGCTACG GTTTCAAAGT CGACATCTCT
    GTTTCCACAG CTGTTCCACT CCGTTGCGCC GCCGAGTATC TAGAAATGAC
    GGAAGAGTAC TCACCGGAGA ATCTCATTTC AAAAACAGAG AAGTTTCTTT
    CAGAGTTCGT CTTCACTAAC GTACAAGAAT CCATCAAAGC GTTGAAAGCT
    TGTGAATCAG TCTCGTCTTT AGCTGAATCA CTCTGTATAA CGGAACAGTG
    TATAGACTCC ATCGTCTTCC AAGCTTCCTC AACCGATCCG TCGTCGTTTT
    ACGGTTGGCC AATAAACAAC GGAGGTATAT TCACCGTTGA CCGGAAGAAA
    CAGAGCAAAG ATTCGAAAAC AGAGCTTTGG TTCGAAGATC TAACGGAGTT
    GAGTTTTCCA ATCTTCAGAC GTGTGATCTT ATCCATGAAG TCGAGTGTCC
    TGAGTCCTGA GATTGTAGAG AGATCTCTAC TTACTTACGC GAAGAAACAC
    ATTCCAGGAA TCTCGCGTTC ATCGTCAGCA TCTTCATCTT CTTCTTCTTC
    TTCCACCACC ATAGCTTCCG AGAATCAACA AAGAGAATTA TTAGAGACGA
    TAACTTCAGA TCTTCCATTA ACTGCGACGA CTACGAGATC TCTCTTCGGT
    TTGTTACGAG CCGCGATCAT TCTCAACGCC TCCGAGAATT GCAGGAAGTT
    TCTAGAGAAA AAAATCGGAT CGAATCTTGA GAAAGCTACG CTTGATGATC
    TTCTCATTCC AAGTTACTCG TATCTCAACG AAACGTTATA CGATATTGAT
    TTGGTGGAGA GACTCTTACG TCGTTTTCTC GAAAACGTCG CCGTGTCGTC
    GTCGTCATTG ACGGTGGTTG GGAGATTGAT CGACGGAGTT CTCGGTGAAA
    TTGCATCGGA CGCTAATCTT AAACCGGAAC AGTTTTATAA TCTGGCGGTT
    TTGCTTCCGG TTCAAGCACG GGTTTACGAT GATGGACTAT ACAGAGCCGT
    CGATATATAT TTCAAGACTC ATTCATGGAT ATTGGAGGAA GAGAAGGAGA
    AGATTTGTAG CGTGATGGAT TGTAGAAAAC TGACTGTTGA AGGATGCACA
    CACGCGGCAC AAAACGAGCG TTTACCACTA CGAGCCGTCG TACAAGTTCT
    GTTTTTGGAG CAGCTACAGC TCCGGCAAGT AATCACTGGG ACTTTACTGA
    CGGAGGAAGA CGGTGATAAA ACGGTGGTGG ACTTGGGTAG ATGGAAGGAA
    GCGGTGAAGG AGAATCAGGT GCTTCGTTTG GATATGGATA CGATGAGGAC
    ACGAGTGAAC CAGCTAGAGA AAGAATGCTT GTACTTGAAG AAAGTGATCG
    CGAAGATCGA CAAAGAAAGT TTGTTGAAGG CGAAGCATGG GGCGGGGAAA
    TGGTCAATCG GGAAGAAGTT CGGATGCAAA TTTTCGGCTC AAGTTTGTGG
    TTCACAGGAG GCAACGATGG TCGATAGAAG ATCACGACGT TTTCTTAGTT
    AGTACATAAA TCAGAATCAT CTTGTGCTTC TAAAAATTGT ATTTTTACTT
    CTTCTGTATA TCTTAAAGAA AAAGATTGAT ACTTTAGATT GAATGGAACT
    CTAAAACACA CCCTGATGGA CTTGTTATTC AGAGAATCAT AGTATAATGA
    TTTAGAGATT ATGAATGTAA ATTTGTAAAA AC

    Gene models with high sequence identity

    1. AT3G50840.1 [+] show detail - Phototropic-responsive NPH3 family protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam NPH3 8.3e-83
    HMMPfam BTB/POZ 0.00000048
    superfamily BTB/POZ fold 0.0000000000000084
    ProfileScan BTB/POZ-like 9.806
    Gene3D BTB/POZ fold 0.000012
    HMMSmart BTB/POZ-like 0.00023

    See the detailed result >

    AT3G50840.1

    Model type
    Protein coding
    Short Description
    Phototropic-responsive NPH3 family protein
    Computational Description
    Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G66560.1); Has 881 Blast hits to 860 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 3; Plants - 864; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR