F16950

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	whole plant flowering stage (PO:0007016)	premature (PATO:0000694) (Adult plant::Flowering::early)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16950

Determination of introduced cDNA(s)

RAFL06-13-C10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-C10 - Resource: pda17197

full reading [+] show sequence

GGAGAGGAAC AACAAGAAAA GTCAAAACGT TGAAGCTTTC TCGAATAACG 
CCTTCTTTAG TTTACAGTCT CTCGTTGCGG GTCTTATCTT CTTCTTCTTC 
TTCCCTCTTT CGTCTGCTCT ATATTATGAC CAGATTCAAA ATTGCGTAGC 
GTACTAATTC AATATAGAGA GAAGTTAGAT CAAAAGAAGA ACACGAAACT 
CTGACTGTGT CTCTCTTTCT CTTCGTGTGT TTCTATATTT ATATATAAAA 
AGACAAGATC TCTGGTCTGG AATTAGAAGA ATCTTATTTG GGGTTTTTTC 
TTAGGATTAA GCTCTAATGG CAGATCAAGT AAAAGAGCGG ACTTTAGAGG 
AGACCTCTAC GTGGGCAGTT GCTGTTGTTT GCTTTGTCTT ACTCTTTATT 
TCGATTGTCC TCGAACATTC TATTCACAAA ATTGGAACCT GGTTTAAAAA 
GAAGCACAAG CAGGCTCTTT TTGAAGCTCT TGAAAAGGTC AAAGCAGAGC 
TTATGCTGTT GGGATTCATA TCACTACTAC TCACAATTGG ACAAACACCA 
ATCTCAAATA TCTGCATCTC CCAGAAAGTT GCGTCAACAA TGCACCCTTG 
CAGTGCTGCT GAAGAAGCTA AAAAATACGG CAAGAAAGAC GCCGGAAAGA 
AAGATGATGG AGATGGAGAT AAACCCGGTC GAAGACTTCT TCTTGAGTTA 
GCTGAATCTT ATATCCATAG AAGAAGTTTA GCCACCAAAG GCTATGACAA 
ATGTGCAGAG AAGGGGAAAG TGGCTTTTGT ATCTGCTTAT GGAATCCACC 
AGCTGCATAT ATTCATCTTC GTGCTCGCGG TTGTTCATGT TGTTTACTGC 
ATTGTTACTT ATGCTTTCGG AAAGATCAAG ATGAGGACGT GGAAGTCGTG 
GGAGGAAGAG ACAAAGACAA TAGAGTATCA GTATTCCAAC GATCCTGAGA 
GGTTCAGGTT TGCGAGGGAC ACATCTTTTG GGAGAAGACA TCTCAATTTC 
TGGAGCAAGA CGAGAGTCAC ACTATGGATT GTTTGTTTTT TTAGACAGTT 
CTTTGGATCT GTCACCAAAG TTGATTACTT AGCACTAAGA CATGGTTTCA 
TCATGGCGCA TTTTGCTCCC GGTAACGAAT CAAGATTCGA TTTCCGCAAG 
TATATTCAGA GATCATTAGA GAAAGACTTC AAAACCGTTG TTGAAATCAG 
TCCGGTTATC TGGTTTGTCG CTGTGCTATT CCTCTTGACC AATTCATATG 
GATTACGTTC TTACCTCTGG TTACCATTCA TTCCACTAGT CGTAATTCTA 
ATAGTTGGAA CAAAGCTTGA AGTCATAATA ACAAAATTGG GTCTAAGAAT 
CCAAGAGAAA GGTGATGTGG TGAGAGGCGC CCCAGTGGTT CAGCCTGGTG 
ATGACCTCTT CTGGTTTGGC AAGCCACGCT TCATTCTTTT CCTTATTCAC 
TTGGTCCTTT TTACGAATGC ATTTCAACTT GCATTCTTTG CCTGGAGTAC 
GTATGAATTC AATCTCAATA ATTGTTTCCA TGAAAGCACT GCAGATGTGG 
TCATTAGACT TGTAGTTGGA GCTGTTGTGC AGATACTTTG CAGCTATGTG 
ACTCTTCCAC TCTATGCACT TGTTACTCAG ATGGGTAGTA AAATGAAGCC 
AACAGTATTC AACGATAGAG TAGCCACGGC ATTAAAGAAG TGGCATCACA 
CTGCAAAGAA CGAGACGAAA CACGGAAGAC ACTCGGGATC CAACACACCT 
TTCTCTAGCC GTCCAACCAC ACCAACACAT GGCTCATCTC CAATCCATCT 
CCTTCACAAT TTCAATAACC GGAGCGTTGA AAATTACCCA AGTTCTCCTT 
CTCCTAGATA CTCTGGTCAT GGTCATCATG AACACCAATT TTGGGATCCT 
GAGTCTCAAC ACCAAGAAGC TGAAACTTCC ACACATCATT CTCTTGCGCA 
TGAAAGCTCA GAACCTGTTC TTGCATCTGT GGAACTTCCT CCTATAAGGA 
CTAGCAAAAG CTTAAGAGAT TTTTCTTTTA AGAAATGATG ATTCTTGTTT 
GCTATATTTG ATTTCGTACA GTGGGAAATT TGTCATATGA AAATAATTTC 
TTGTACATTA AAAA

Gene models with high sequence identity

AT1G11310.1 [+] show detail - Seven transmembrane MLO family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

See the detailed result >

AT1G11310.1

Model type: Protein coding
Short Description: Seven transmembrane MLO family protein
Curator Summary: A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter.
Computational Description: MILDEW RESISTANCE LOCUS O 2 (MLO2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, response to fungus, negative regulation of defense response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G61560.1); Has 559 Blast hits to 538 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 551; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR