F17106

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17106

Determination of introduced cDNA(s)

  • RAFL06-68-C07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-C07 - Resource: pda07613

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-C07 - full reading
    GGAGAGAGAG AAAGATGCAG AGGGACGTGT CGAGCTGCAA CACTTACAAC 
    TATGGAGACG CTCTCTATTG GGACGCTCGT TACGTGCAAG ACGCGCTTTC
    TTTCGACTGG TACCAATGTT ACTCTTCTCT CCGCCCTTTT GTCCGCAGCT
    TCGTCTCTAC TTCTTCACGA GTCCTCATGG TTGGCTGTGG CAACTCCCTG
    ATGTCAGAGG ATATGGTGAA GGATGGGTAT GAGGACATCA TGAATGTTGA
    TATCTCTTCA GTGGCTATTG AGATGATGCA AACCAAATAT GCATCTGTTC
    CTCAGCTCAA ATATATGCAA ATGGATGTTA GAGATATGAG TTACTTTGAA
    GACGATTCCT TTGACACTAT TATTGATAAA GGAACCCTTG ATTCATTGAT
    GTGTGGCAGT GATGCTCTTC TAAGTGCTTC GAGAATGTTG GGTGAAGTTA
    GCAGGCTGAT TAAACCTGGA GGGACCTACT TTTTGATAAC CTACGGTGAT
    CCGAAAGTGA GAATGCCTCA TTTGACTCGT TCTGCGTACA ACTGGAAGAT
    CTCCTTATAC ATTATACCAA GACCAGGATT TAAAAGGCCA GAAAGTTGCA
    GCTCGTCAGC AAAGTCTTGT ATGGAAGCTA TACCTATAAC AAGTGAGGGA
    ATGCTGCCAC ATGATTATGT TCTGGAGGAT CCTGATTCCC ATTTTATTTA
    CATATGCAAG AAGAAGGATG AAGATGAAGA AGCTCAACTA CCCTCATACC
    CATTAATGGA GGATGTTTTG TAGTGATGGC ACGCAGAGGC TCAAACAATG
    CAAAATTGTG CATGTGTGTT TGTCTTTTTG ATCCCCATTT AGACCAGTCG
    ATCTATTGTT GTATTTTATG TGTCTTGTGA TCTTATCCCA ATTGATAGGT
    CCGAGTCTCA GAATTGCTCT ATAAACTCAT AATATACGAA TAAACATCAA
    CCTTTATTAT CTCGAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G60910.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 4e-100
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.1e-21
    Gene3D no description 1.6e-09
    HMMPfam Methyltransferase type 11 1.2e-11

    See the detailed result >

    AT3G60910.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G17365.1); Has 1732 Blast hits to 1731 proteins in 520 species: Archae - 43; Bacteria - 761; Metazoa - 337; Fungi - 50; Plants - 206; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR