F17132

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17132

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17132

Determination of introduced cDNA(s)

  • RAFL08-12-G11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-G11 - Resource: pda04721

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-12-G11 - full reading 
    TTTCTTTCGT TTGGCCTTTG ATCCTATCAT AAGCTTTTTT TCGTTTATCA 
    ATCTTCTCGA TTCAGCCACA ATTCTTGTTT CTCAGATAAT TCATCTCCTT 
    TCTTTGATTC GTTTCCTTCT CTTCTGTCAC TCAGATCTAG ATCTAGATCT 
    AGGTTTTTTT CTTTCTCATC GGAAATTTGG CTTAGAGGCT TGTTTTGATC 
    TAGGGTTTGG TTTTTGGGAA TTTTGAAAAA AAAAAAAACA AAATTAGGAA 
    TGAATCTATG AGCTACTCAA TCCTGTTTCG TCGGATTCGA ATTCTACACT 
    CTTTCTCCGT CGTTTACCTC TACTACACCT ACGTTTTCTC ATGAAGTAAT 
    CGTTCTCGAT CTCAGTTTTC GTTTTTGATC TAACTTATTC TTTGATAGAT 
    TTAGAAATCG GGGATTTTCA GATTGTGTTT TTGAGAGGTT TTTATAGGAA 
    AATATCTCTA GAAGAAGAAG AATAATATTA TATTGATTTT AATTTTGGTG 
    AGAAGAAGTC AAAAAGTCAA CGAGAAATGG GGTCGTTGCA AATGCAAACA 
    AGTCCTGAAT CCGATAATGA TCCGAGGTAC GCCACGGTGA CGGATGAGAG 
    GAAGAGGAAG AGAATGATCT CTAACAGAGA ATCTGCTCGG AGGTCAAGGA 
    TGAGGAAACA GAAGCAACTT GGTGATTTGA TCAACGAAGT CACTCTTCTC 
    AAGAATGATA ACGCTAAAAT CACTGAGCAG GTTGATGAAG CTTCAAAGAA 
    ATACATTGAA ATGGAGTCTA AGAACAATGT CTTGAGGGCA CAGGCTTCGG 
    AGTTGACGGA TAGGTTGAGA TCATTGAACT CTGTGCTTGA GATGGTTGAA 
    GAAATTAGTG GTCAGGCTTT GGATATTCCT GAGATTCCTG AATCTATGCA 
    GAACCCTTGG CAGATGCCTT GTCCAATGCA ACCAATCAGA GCTTCTGCTG 
    ATATGTTTGA TTGCTGAAGA TGGATGATTC ATATCTGAAG GATCAAAAAT 
    GAAGCATTGA GTTCGAGTCT TTGGTCTGTT TTACTTACTG TCCTTGTTGT 
    AACAATTAGT GTGTCATTGG TGAATTGAGT CTTGTGTTGT CAATGGACAA 
    CGCAATCTTT ATGCAATTTC AATTTGTTCG TGTCTTTGTA TGGTTTTGTA 
    GCCTCAGTCC TCTAGTCTTG TGTCTCATGT AATTGGTGTC TAATGTGTTT 
    CTTATTGAAT TCAAGCTTTC TTATTGAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G62422.1 [+] show detail - conserved peptide upstream open reading frame 3
      E-value: 0; Score: 99.67

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 4.1e-15
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 10.645
    HMMPfam bZIP transcription factor, bZIP-1 1.2e-10
    Coil coiled-coil 0

    See the detailed result >

    AT3G62422.1

    Model type
    Protein coding
    Short Description
    conserved peptide upstream open reading frame 3
    Curator Summary
    Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF3 represents a conserved upstream opening reading frame relative to major ORF AT3G62420.1
    Computational Description
    conserved peptide upstream open reading frame 3 (CPuORF3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR