F17145

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17145

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17145

Determination of introduced cDNA(s)

  • RAFL08-13-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-13-L08 - Resource: pda04782

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-13-L08 - full reading
    GGGTGCGCTC TTTGTGGCGG CTCGTCTTCT TCTTCTTCTT CCACGGGACT 
    CTCTCTGAAT CGGTGATTTT CGATCTTCCT AGGGTTTCGA TCTGAAACCT
    TGCGATCTAC TTGAAAGAGA GATTCAGAAA TTTCCAAGTA ATAATAATGT
    TTGCGCCTGC GACTCAACCG CAACAGCAAC ATGAGCAGAA GAAGCAATCA
    GAGACTGTTT CATCTGCTGA AGAAGATGCT TTGAAGTGGA ACACCGATTG
    CGTTTACTTT CTCGCTTCTC CTTTAACCTG CAAGAAGGGA CCTGAATGCG
    AGTATCGCCA CAGTGAGTAT GCGCGTATGA ACCCGAGGGA TTGCTATTAT
    TGGTTGAATG GAAACTGTTT GAATCCCAAA TGTGGATTTC GGCATCCTCC
    TTTGGAGGGA TTGTTGGGAA ATCAAGGAGG TGCTCCTGCT GTTTCTGTAC
    AGCCAATACA TGCAACCGCG CAGCATCCTA GTGTTGCAAA ACAGCCTGTT
    CCATGTCTGT TCTTTCAAAA AGGCATGTGT ATGAAAGGAG ATATGTGTTC
    GTTCTTGCAC ACGCCGAATC CTGCTGCGTA TAAAAAACAG CATCCTGTAG
    AAGCTAAGCC TGCTACTGAT CCTCAGTGTT CTAAAAAGCC AATTGAAAAT
    AACACTGAGG AGAAGAAACT TCCTGATGTT AATCTCTCAA AGGTGGTTAA
    AGGACATACT GACATATCGG CTGCACCAAG AGTCGCTTCT ACTGGACTAA
    GGGATAGTAG AAGTGTAGAG GGATACATTC CAAACCATGT GGGATATGAG
    CCTGTTGTGC AGAGAAAGGG TCCAGGATTC CCTTCTTTTA CTGAAGGAGG
    CCATTCTACT CAGTTGCTTC AGAAATATGG ATCTGATGAT AATAACAGTT
    TCCACAATGG TAAGGATGCA GATGACGTTT TAAGAGAGTC GTCTCCTGGG
    TTTGATGTTC TTGTGGATAA TGAGGCTGGA GATTCTGAGT ATTATCATGT
    TGAAGATCGA TATGGACGTA GAAGTCAGGA GAGAGGGAAC TCAGAGTATG
    ACCCTGATTT CAGTGCAATT GCTGATGGTG ATAAAGAAGC ATTACGTGAA
    CAACGTTTTG ATTCATATGA TCGGAGGGAA GACAGGGGAT GGGGCCATCG
    TCGAGTTTCT TCTGAGAGAG AGGATCGTTT GGACAGAAGG GTTTACGCAG
    AAGATGAGAG ATCAGAGAAC ATACTGGAAT CGGATCTGAG ATATCGTTTG
    GCTAAGCAGA GAAAAGGCAA TGGTATGAGA TTATCAGTAG GAGGCCATGA
    CTATGCTGCT CCTGACTCTT CGATGGACAG AGGATATAGA GAGTCTCGTA
    GGGATACACC GAGGGAAAAC TCCATTAGCA GTAGTCGTCT TCAGGGTAGA
    ATTAAGCTTC GTGAGAGAAG CAATGGCGAA GAGGGTCACC ACTTTGACAG
    GAGAAGTGAG AGGGGAAGGG ACAGAAGCGA GTTACCTTCT CAGGGTAGAC
    TCCGAGATAG AATTAAGAGT AGGTTAGAGG AAAACCATAG TGGTAATCAG
    GAAAGAGGTT TCGGGGCTCC ATGGGCGAGA AGAAGAGAAA TGGAAGACGA
    AAGAAAATCA GCTCCTAAAA GCAGCAGAGA GGAAAGTAAG CCAGAGCCAT
    CTCTTGGGAA GAGGAAAAGC TTTGAAGAGG ATCATCATAG TCATAAGCGA
    TCAAGGGATT CATTTGCAGC TCCATTGCCT TTCAGTGAGA TTCTCAAGAG
    AAAAAAAGCG GCCGCATCTG GTGGTAGCAG AAACAACAAC AAGGACGAGA
    CGATATCGAA AGAGGAAGCT GGAGATGAGA TCAAACTCAT AACCGAAGAG
    AAAACCGAGG TTGTCTCTGA ACCCAAAGCT GAAGTAGAAG AAGAAGGAAC
    GGTTATGGAG GAAGAAGAAA TTGTTGGGGA GGAAGTGTAT GAAGGAAATG
    AAGACGAGCA AGCTTATGAA GGCGATGAGC TAAACGGAGA GTACTATTAC
    GAAGAAGGAT ATGAAGAAGA GGGAGGAGAA TACGCTTACG AAGAAGGTGA
    AGAAGTAGTT TACGCGGCTG AGGAAGGAGA AGAAGAAGCA ACAGAAGGAG
    GTGAAGGTGA GGGTGAAGAA GACATTGAGA AGAAGACCGT TGAGATGTTG
    TCATAAAAGA AGAAAGAGTA ACACAGAAAA AAGCTTTTGC TCCTTTCCTC
    TCTCTCTCTC TCTCTGCTTA ATGCAAATGG AGAGAAGAAG TCGTAGAGCA
    AATAATACGA GTCGCTTTTA TCTTTGGCTT GGCACTGAGT TTTAGTCGCC
    ATTTTTTCTT ACTGTGATTT CTTAAATTGT AACACTAGAG AAGAAAGAAA
    AGAAACAATG GTACAAGTAC ACCATATCAT ATTTCTGAGT TTTACTGTTT
    TCTAATCTGT TTTGATATAT TACTTTTTCC TCAAATTAAA AAGTATTTAC
    AGTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT2G02160.1 [+] show detail - CCCH-type zinc finger family protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, CCCH-type 9.798
    ProfileScan Zinc finger, CCCH-type 10.803
    ProfileScan Zinc finger, CCCH-type 14.23
    HMMSmart Zinc finger, CCCH-type 0.00067
    HMMSmart Zinc finger, CCCH-type 0.052
    HMMSmart Zinc finger, CCCH-type 0.00027

    See the detailed result >

    AT2G02160.1

    Model type
    Protein coding
    Short Description
    CCCH-type zinc finger family protein
    Computational Description
    CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR