F17222

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17222

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17222

Determination of introduced cDNA(s)

  • RAFL04-15-A03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-A03 - Resource: pda00548

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-A03 - full reading 
    AAAAAACCCT AGAAAAAATG GCAGGAACCG GAGTTGTGGC GGTGTACGGC 
    GAAGGAGCCA TGACGGAGAC GAAACAGAAA TCTCCCTTCT CCGTGAAAGT 
    TGGTCTCGCT CAGATGCTTC GTGGCGGTGT AATCATGGAT GTCGTCAACG 
    CAGAGCAAGC TCGAATCGCT GAAGAAGCTG GCGCATGCGC CGTGATGGCT 
    CTTGAACGTG TTCCCGCCGA TATTCGAGCT CAAGGCGGTG TTGCTCGAAT 
    GAGCGATCCA GAGATGATCA AAGAAATCAA AAACGCCGTG ACGATTCCGG 
    TGATGGCGAA AGCTAGAATT GGTCATTTCG TTGAAGCTCA GATCCTGGAA 
    GCAATCGGAG TTGATTACGT CGACGAGAGT GAAGTTCTCA CTCTCGCCGA 
    CGAAGATAAT CACATCAACA AACATAATTT CAAAATCCCT TTTGTTTGTG 
    GATGTAGGAA TCTCGGTGAA GCTTTAAGGC GGATCCGTGA AGGAGCCGCC 
    ATGATAAGAA CCAAAGGTGA GGCTGGAACT GGTAACGTTG TTGAAGCCGT 
    TAGGCACGTG AGGAGTGTGA ACGGAGCTAT TCGGTTACTT AGAAGCATGG 
    ACGATGACGA GGTTTTCACT TACGCGAAAA AGATCGCTGC GCCGTATGAT 
    TTGGTTGTGC AGACTAAGGA GCTTGGGAGG TTACCGGTGG TTCAGTTCGC 
    TGCTGGAGGA GTGGCGACGC CGGCGGATGC GGCGTTGATG ATGCAGTTGG 
    GATGTGATGG AGTGTTTGTT GGGTCGGGTG TTTTCAAGAG TGGAGATCCG 
    GTGAAGAGGG CTAAGGCTAT TGTTCAGGCG GTTACGAATT ATAGAGACGC 
    GGCGGTGTTG GCGGAGGTGA GCTGTGGTTT AGGTGAAGCC ATGGTTGGTC 
    TTAATTTGGA TGATAAGGTT GAGAGGTTCG CTAGTCGTTC TGAGTAACCA 
    ATCAAATTTC AGATGTTTTT ATCCATAACG TTTGTCACTT TAATATGTAT 
    CCACAAACCA ATATTCTCGA TTTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT2G38230.1 [+] show detail - pyridoxine biosynthesis 1.1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Vitamin B6 biosynthesis protein 5.6e-215
    HMMPfam Vitamin B6 biosynthesis protein 5.2e-115
    HMMTigr Vitamin B6 biosynthesis protein 2.8e-162
    ProfileScan Vitamin B6 biosynthesis protein 169.552
    HAMAP Vitamin B6 biosynthesis protein 49.776
    PatternScan Vitamin B6 biosynthesis protein 0
    superfamily Ribulose-phosphate binding barrel 3.4e-46

    See the detailed result >

    AT2G38230.1

    Model type
    Protein coding
    Short Description
    pyridoxine biosynthesis 1.1
    Curator Summary
    Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.
    Computational Description
    pyridoxine biosynthesis 1.1 (PDX1.1); FUNCTIONS IN: protein heterodimerization activity; INVOLVED IN: vitamin B6 biosynthetic process, response to absence of light; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 14 plant structures; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G01410.1); Has 4179 Blast hits to 4172 proteins in 1294 species: Archae - 234; Bacteria - 2657; Metazoa - 13; Fungi - 160; Plants - 179; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR