F17242

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17242

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17242

Determination of introduced cDNA(s)

  • RAFL06-73-D20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-73-D20 - Resource: pda03431

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-73-D20 - full reading 
    GGATCAAGTT CTCAATTTCT CTCCGTTATC TCAATCGCGA CCAAAGATCT 
    CTTCGATCAA AACCCTAGCT CTAAATTCCC CCAAATCTGA TTCTTCTCCT 
    CCGATAAGCT TTTGTTGAAT TCACAAAGCA GCGTAAATGG TGTTGGCGGA 
    GCTAGGCGGG CGGATTACCC GCGCGATACA GCAGATGAGC AATGTGACAA 
    TTATCGATGA GAAGGCTTTG AATGAATGCT TGAACGAGAT CACTCGTGCT 
    TTGCTTCAAT CCGATGTTTC ATTTCCCCTT GTGAAAGAGA TGCAGAGTAA 
    TATTAAGAAA ATCGTCAATC TTGAAGATCT AGCAGCTGGT CACAACAAGC 
    GCCGGATCAT TGAACAGGCT ATCTTTAGTG AACTCTGTAA GATGTTGGAT 
    CCAGGGAAGC CTGCGTTTGC TCCTAAAAAA GCTAAAGCTA GTGTAGTTAT 
    GTTTGTTGGA TTACAAGGTG CTGGAAAGAC GACAACTTGT ACTAAGTATG 
    CTTATTATCA TCAGAAGAAA GGATACAAAC CAGCTTTGGT TTGTGCGGAT 
    ACTTTCAGGG CTGGTGCGTT CGATCAGCTG AAACAGAATG CTACCAAGGC 
    TAAGATCCCC TTTTATGGAA GCTACACGGA ATCCGATCCT GTGAAAATTG 
    CTGTTGAGGG AGTAGATACG TTTAAGAAAG AAAACTGTGA TCTCATTATT 
    GTTGATACCA GTGGTCGCCA TAAACAAGAA GCTTCTCTCT TTGAAGAAAT 
    GCGTCAAGTT GCTGAAGCAA CGAAACCAGA TCTTGTTATA TTTGTTATGG 
    ATAGCAGTAT TGGTCAAGCT GCATTTGATC AAGCTCAAGC CTTTAAGCAG 
    AGTGTTGCTG TTGGAGCTGT AATTATTACT AAGATGGACG GCCATGCCAA 
    GGGTGGTGGG GCTCTTAGCG CTGTTGCAGC TACGAAAAGT CCTGTGATAT 
    TTATCGGAAC AGGAGAGCAT ATGGATGAGT TTGAAGTGTT TGACGTCAAA 
    CCATTTGTCA GCCGTCTCTT AGGAATGGGT GATTGGTCTG GATTCGTGGA 
    TAAGCTACAA GAGGTAGTAC CTAAAGATCA ACAGCCTGAA CTTCTGGAAA 
    AGCTCTCTCA GGGTAACTTT ACGTTGAGAA TTATGTACGA CCAGTTCCAG 
    AACATACTGA ACATGGGTCC ACTTAAGGAG GTTTTCTCAA TGCTGCCTGG 
    AATTAGTGCT GAAATGATGC CGAAAGGACA TGAGAAAGAA AGCCAGGCGA 
    AGATAAAGCG GTACATGACA ATGATGGATT CTATGACAAA TGATGAACTG 
    GACAGCTCAA ACCCAAAGGT GTTTAACGAG TCACGGATGA TGCGGATAGC 
    AAGAGGGTCA GGGAGGCAAG TAAGAGAAGT GATGGAGATG TTGGAAGAGT 
    ACAAGAGGCT AGCGAAGATA TGGAGCAAGA TGAAAGGACT CAAGATCCCA 
    AAGAATGGAG ATATGAGTGC ACTCTCGAGA AACATGAACG CACAGCACAT 
    GAGCAAGGTC CTCCCACCTC AGATGCTCAA GCAGATTGGC GGCATGGGCG 
    GTCTGCAGAG TCTAATGAAG CAGATGGGTT CCGGCAAGGA CATGATGGGA 
    ATGTTCGGTG GCGGAGACAA GTAGTATCTT TCTTCCTTCC TTTGCACACC 
    AAAAACTAGA CATTCTTACG TTGTCATTAT TAGAGTTTTC CCCTTTGTAT 
    TTGTAAAATA TTTGCAAATT TTCTCCAATT TTACAAAAAG AGATTTGGTA 
    ACAAAATAAT GTCTAGGGTC CAGTCGTGGA CATTATATAT TGAAAACCAA 
    AAAAAAATTT ATATC

    Gene models with high sequence identity

    1. AT1G48900.1 [+] show detail - Signal recognition particle, SRP54 subunit protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Signal recognition particle, SRP54 subunit 0
    Gene3D Signal recognition particle, SRP54 subunit, helical bundle 1.6e-18
    Gene3D no description 1.4e-65
    Gene3D Signal recognition particle, SRP54 subunit, M-domain 1e-28
    HMMPfam Signal recognition particle, SRP54 subunit, GTPase 3.2e-76
    HMMPfam Signal recognition particle, SRP54 subunit, M-domain 3.2e-28
    HMMPfam Signal recognition particle, SRP54 subunit, helical bundle 4.2e-13
    HMMSmart ATPase, AAA+ type, core 0.0048
    superfamily P-loop containing nucleoside triphosphate hyd 1.8e-67
    superfamily Signal recognition particle, SRP54 subunit, M-domain 2.3e-41
    superfamily Signal recognition particle, SRP54 subunit, helical bundle 1.3e-19
    HMMPanther SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1.9e-269
    HMMPanther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITIO 1.9e-269
    PatternScan Signal recognition particle, SRP54 subunit, GTPase 0

    See the detailed result >

    AT1G48900.1

    Model type
    Protein coding
    Short Description
    Signal recognition particle, SRP54 subunit protein
    Computational Description
    Signal recognition particle, SRP54 subunit protein; FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT5G49500.1); Has 17579 Blast hits to 17572 proteins in 2934 species: Archae - 472; Bacteria - 10667; Metazoa - 363; Fungi - 296; Plants - 287; Viruses - 1; Other Eukaryotes - 5493 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR