F17244

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17244

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17244

Determination of introduced cDNA(s)

  • RAFL09-69-H18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-H18 - Resource: pda08691

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-H18 - full reading 
    ATTTGCTCCT GTTAACAAAT TTGCCAACTT TCTTCCATTT TCGAATCCCT 
    CTTAACGCAA AGTTAGGTTT TTTGTTAATT CATTTCATTG CTTGGATCCT 
    AAGGAAAAAA AAAACAGAAA TGAAAAAACC CAAATTGTCG AAAGTGGAAA 
    AAATCGACAA GATTGATCTG TTCTCTTCAC TATGGAAGCA GAGATCGGTT 
    CGTGTAATAA TGGCAATAGG GTTTCTCTAT CTTGTAATTG TCTCAGTAGA 
    GATACCTCTC GTTTTCAAAT CCTGGTCCAG CAGCTCCGTG CCTCTTGATG 
    CTCTTTCTCG ACTCGAGAAG CTCAATAACG AGCAAGAGCC CCAAGTCGAG 
    ATTATCCCTA ATCCTCCATT GGAGCCAGTT TCGTACCCGG TTTCGAACCC 
    GACCATTGTT ACCCGGACGG ACCTTGTTCA GAACAAGGTC CGTGAACATC 
    ATCGGGGTGT TCTCTCAAGT TTGAGATTTG ATTCGGAAAC TTTCGACCCG 
    AGTAGTAAAG ACGGGTCAGT GGAGCTTCAC AAGTCAGCTA AGGAAGCTTG 
    GCAGCTAGGT CGCAAGCTAT GGAAGGAGCT TGAATCTGGA AGGCTTGAGA 
    AACTAGTGGA GAAGCCAGAG AAGAACAAAC CGGATTCATG TCCACATTCT 
    GTTTCGCTAA CCGGGTCTGA GTTTATGAAC CGGGAGAACA AATTGATGGA 
    GCTGCCGTGT GGTTTGACAT TGGGTTCACA CATAACTTTG GTGGGGAGGC 
    CGAGGAAAGC TCATCCCAAG GAAGGAGATT GGTCTAAGTT GGTGTCTCAG 
    TTTGTGATAG AGCTTCAAGG TTTGAAGACT GTTGAAGGAG AGGATCCTCC 
    TAGGATTCTG CATTTCAATC CGAGGCTTAA GGGAGATTGG AGCAAAAAAC 
    CGGTGATTGA GCAGAATAGT TGCTATAGGA TGCAATGGGG ACCTGCACAA 
    CGTTGCGAAG GATGGAAGTC AAGAGATGAT GAAGAGACTG TTGATAGTCA 
    TGTGAAGTGT GAAAAATGGA TTCGTGATGA TGACAATTAC TCAGAAGGGT 
    CGAGGGCAAG ATGGTGGTTG AATAGACTTA TAGGAAGGAG GAAAAGGGTC 
    AAAGTAGAAT GGCCGTTTCC TTTTGTGGAA GAGAAGCTGT TCGTTCTAAC 
    TCTTAGCGCC GGTTTAGAGG GTTACCATAT CAATGTTGAT GGAAAGCATG 
    TTACTTCTTT CCCTTATCGC ACTGGTTTCA CCCTTGAGGA TGCAACAGGG 
    CTAACAGTAA ACGGAGACAT TGATGTCCAT TCTGTTTTTG TTGCCTCTCT 
    GCCAACATCA CATCCTAGTT TTGCTCCCCA AAGGCATCTC GAATTGTCAA 
    AGAGATGGCA GGCTCCTGTA GTTCCCGATG GGCCTGTGGA GATCTTTATA 
    GGCATTCTTT CCGCAGGCAA TCATTTCTCT GAGCGGATGG CTGTGAGGAA 
    ATCCTGGATG CAGCATGTTC TTATTACATC TGCAAAAGTT GTTGCTCGTT 
    TCTTTGTGGC GCTGCATGGG AGGAAGGAGG TGAATGTGGA ATTGAAGAAA 
    GAAGCGGAGT ATTTTGGGGA CATTGTACTT GTTCCTTACA TGGATAGCTA 
    TGATCTTGTC GTGCTGAAAA CTGTTGCCAT ATGTGAACAC GGAGCTCTTG 
    CATTCTCTGC AAAGTACATA ATGAAGTGTG ACGATGATAC ATTTGTAAAA 
    CTTGGCGCGG TGATCAATGA AGTGAAAAAA GTACCCGAAG GTAGAAGCCT 
    GTACATTGGT AACATGAATT ATTACCACAA ACCTCTCCGT GGGGGTAAAT 
    GGGCAGTCAC ATATGAGGAA TGGCCAGAGG AGGACTATCC GCCCTACGCA 
    AATGGACCCG GATATGTTCT ATCTTCTGAC ATTGCGCGCT TCATCGTGGA 
    CAAGTTTGAG AGACATAAAT TACGGCTGTT CAAGATGGAG GACGTGAGTG 
    TGGGAATGTG GGTTGAGCAT TTCAAGAACA CAACAAACCC AGTGGATTAC 
    AGACACAGTC TGAGATTCTG CCAGTTTGGT TGTGTTGAGA ACTACTACAC 
    AGCTCATTAC CAGTCGCCAA GACAGATGAT ATGCTTATGG GATAAGCTCT 
    TAAGACAGAA CAAGCCTGAG TGTTGTAACA TGAGATGATG ATACTTGAGG 
    AAACAGTTGC ATTTTCTGAG ATCTAATATG CCATCAAGCT TGCTGTAGAA 
    AGCCAGGAAA ATTTTGCAAG CGTACCACAC AGAGAGAGAA AGAGAGCCAG 
    GACTTGGTTC GATTGGTCTG CAGCCTTCTG ATCTGTTAAA GAAATGGAGA 
    GAACATGGAG TAGGGAAGAA CACGTAGGGA ATTTACTTTA TTTTTATTTG 
    TATAAACCCA TTTCTTAATC TAAATGGAAA TTTGTTTTCT C

    Gene models with high sequence identity

    1. AT1G74800.1 [+] show detail - Galactosyltransferase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Concanavalin A-like lectin/glucanase 1.2e-24
    HMMPanther BETA 1,3-GALACTOSYLTRANSFERASE-RELATED 4.3e-144
    HMMPanther Glycosyl transferase, family 31 4.3e-144
    HMMPfam Galectin, carbohydrate recognition domain 8.4e-49
    HMMPfam Glycosyl transferase, family 31 1.2e-30
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 2.6e-06
    ProfileScan Galectin, carbohydrate recognition domain 35.809

    See the detailed result >

    AT1G74800.1

    Model type
    Protein coding
    Short Description
    Galactosyltransferase family protein
    Computational Description
    Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT5G62620.1); Has 2254 Blast hits to 2220 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 1612; Fungi - 6; Plants - 579; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR