F17246

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17246

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17246

Determination of introduced cDNA(s)

  • RAFL09-21-G21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-21-G21 - Resource: pda08023

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-21-G21 - full reading
    AAAAACTTGA GAAGATGATG GCTGATGACA CTGAACTCGT CAGTAACACT 
    GACCAGAAGA TGGAAGACGC TTCAGCCGAA AACCCTGCCC GAGCTGATCC
    CCCCTCATCG GATGATTCCG GCGATTCTGA TTCCGACTCA GAAGATGAAG
    CCGAGTCGAA TCACCAGATT GTAACCTTGG AGTCGGAGCT CTCCGCTAAT
    CCTTACAACT ACGATGCTTA TGTCCAATAC ATTAAGCTTC TCAGGAAAAC
    AGCCAACCTT GAAAAGCTAA GACAAGCAAG GGAAGCTATG AGTGCCATAT
    TTCCGTTGAG TCCTTCCTTG TGGCTTGAAT GGGCAAGGGA TGAAGCGTCT
    TTAGCCGCTA GTGAGAATGT GCCTGAAATT GTGATGCTTT ATGAACGGGG
    ACTTTCTGAT TATCAGTCTG TATCTCTTTG GTGTGACTAC CTGAGCTTTA
    TGCTAGAATT TGATCCATCA GTGCGTGGAT ACCCATCTGA AGGTATTTCC
    AAAATGCGGA GTCTTTTTGA ACGTGCTATT CCGGCTGCGG GCTTCCATGT
    TACTGAAGGC AATAGAATAT GGGAAGGATA TAGAGAATTT GAGCAAGGTG
    TCTTAGCCAC TATCGACGAG GCTGACATTG AGGAGAGAAA TAAGCAGATA
    CAAAGGATCA GAAGCATATT CCACCGTCAC CTGTCTGTTC CTCTAGAAAA
    CTTGAGCTCC ACCCTTATTG CTTACAAGAC TTGGGAGTTG GAACAGGGCA
    TTGACCTTGA TATTGGATCT GATGATTTGA GTAAGGTTTC TCATCAGGTT
    GCTGTTGCAA ACAAGAAGGC ACAGCAGATG TATAGTGAAC GTGCCCATCT
    TGAAGAAAAC ATATCTAAGC AAGATTTATC TGACACGGAA AAGTTTCAGG
    AATTCATGAA TTATATAAAG TTTGAGAAGA CTTCTGGAGA TCCTACCCGA
    GTTCAAGCTA TATATGAACG TGCTGTGGCT GAATACCCGG TTTCAAGTGA
    CTTGTGGATA GACTACACCG TGTATCTTGA TAAAACTTTG AAGGTTGGAA
    AAGCTATAAC GCATGCCTAT TCTAGGGCGA CTAGAAGTTG TCCATGGACT
    GGAGATCTTT GGGCACGTTA TTTACTTGCT TTAGAGCGTG GTTCTGCATC
    CGAGAAAGAG ATTTATGATG TCTTTGAGAA GTCATTGCAG TGCACATTTT
    CCTCCTTTGA AGAGTACCTG GATTTATACC TCACTCGAGT AGATGGCCTG
    AGAAGGAGAA TGTTATCAAC TAGGATGCTA GAGGCTTTGG ACTATTCTCT
    GATAAGAGAA ACTTTTCAGC AAGCATCAGA TTACCTAACG CCTCACATGC
    AAAATACAGA CAGTTTGCTA CATTTGCATA CTTATTGGGC TAACTTGGAA
    CTTAATATTG GAAAAGATCT AGCTGGCGCA CGAGGTGTTT GGGATAGCTT
    TCTGAAGAAG AGTGGTGGGA TGCTAGCAGC CTGGCATGCA TACATTGATA
    TGGAAGTGCA TTTGGGGCAT ATAAAGGAAG CTAGGTCTAT TTACCGGAGG
    TGCTATACAA GAAAGTTTGA TGGAACTGGC TCAGAAGACA TATGCAAAGG
    ATGGTTGCGC TTTGAGAGGG AGCATGGGGA TTTGGAACAT TTTGACCTAG
    CAGTTCAAAA GGTTATGCCA CGCTTGGAAG AGCTACAATT GATGAGGTTA
    CAACAAGAGT CTACACCAGT CAAACCGTCA GCTGGTCTGA AAGAGCATAG
    CTCACAAAAG AGAAAAGCAG AACAGAATGT AGAAGAAGAG TCTTTGGCTA
    AGCGGCAGAA GAGGAAAAGT CAAAAAGAAG TGGACCTAGG TGGTCAGAGT
    GCAACTGTAC CAGCAACAAA AAACGTTAAA GCAGAGAATG GAAAAACAGC
    TGATTCAGAT AAAGAAGAGA CAGAAGATGT CAAACCACTG AAGCCGAAAG
    TTTATAGAGA CGAGTGTACA GCTTTTATTT CGAATCTCAG TGTCAAGGCA
    CAAGAGGAAG ATATACGTAA ATTCTTTGGT GATGATGGTG GGGTTGATTC
    CATTCGCATT CTCCATCACA AAGACACTGG AAAACCAAGG GGACTGGCAT
    ATGCTGATTT TGTGGATGAT GAACACCTTG CAGCAGCTAT AGCAAAGAAC
    AGAAAGATGT TTTTTGGTAA GAAGATCAGC ATAGCACGGT CAAATCCAAA
    GAAGGGTAAA AAAGAATTCA CTCGGCGTGG AAATGATGGT TCTGGGAATT
    CAAAGGACCC TTCCCTGATT TCTGAGAAGG CGAAAGCACC ACTTGGTGGA
    GAAACTGAGG GTGAAAGGAA AGGAAATGAA GTGGAAGTGA GGGGTAAGAA
    CACGTTTGCT GTCCCAAGAA ATGTTAAACC ACTCGGCTAC ACGACACCTA
    AACCCAGCGC AGATGAGACA CCAAAATCAA ATGATGAGTT CAGGAATATG
    TTCCTTAAAA AGTGAGACTT TTGCTTGGTC CCTATCTTCC TTCCCTTAGA
    TACTTGTCTT GTTCTACTTT TCGGAAGTAA TCTTATGTTG TAGACCAGCA
    ACATAGGATC TGCTACTCTC TTTTGTCAAG ATAACTAGTT GAGCTTCTAT
    ATAACTAATA TATAAATTTA AGTCTTGC

    Gene models with high sequence identity

    1. AT4G24270.1 [+] show detail - EMBRYO DEFECTIVE 140
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 13.891
    superfamily RNA-binding domain, RBD 8.5e-19
    superfamily TPR-like 5.3e-09
    Gene3D Nucleotide-binding, alpha-beta plait 9.5e-17
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMSmart RNA-processing protein, HAT helix 140
    HMMSmart RNA-processing protein, HAT helix 12
    HMMSmart RNA-processing protein, HAT helix 12
    HMMSmart RNA-processing protein, HAT helix 230
    HMMSmart RNA-processing protein, HAT helix 0.0005
    HMMSmart RNA-processing protein, HAT helix 47
    HMMSmart RNA-processing protein, HAT helix 43
    HMMSmart RNA-processing protein, HAT helix 26
    HMMSmart RNA recognition motif, RNP-1 4.6e-16
    HMMPfam RNA recognition motif, RNP-1 1.2e-11
    HMMPfam Lsm interaction 2.5e-08
    HMMPanther RIBONUCLEOPROTEIN-RELATED 6.3e-188

    See the detailed result >

    AT4G24270.1

    Model type
    Protein coding
    Short Description
    EMBRYO DEFECTIVE 140
    Curator Summary
    A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
    Computational Description
    EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6865 Blast hits to 6296 proteins in 569 species: Archae - 0; Bacteria - 876; Metazoa - 2538; Fungi - 1681; Plants - 1001; Viruses - 0; Other Eukaryotes - 769 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR