F17249

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17249

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17249

Determination of introduced cDNA(s)

  • RAFL09-47-K03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-K03 - Resource: pda06339

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-47-K03 - full reading 
    ACCACCTCTC AAAGTCGCCT GAGAATCAGA GCTCTCTCTT TTCTCTCTCC 
    CATCCTTTTT TTTTTTTTTT TTTTTTCTGT CGGGTTCTTT GTGCTTTCCG 
    TCAATTTCTT CTCGGAGAGC GACTAATTTC GACGATTAGC TCGGTGGCTG 
    TTTTCTTTCA ATTCGTGCAT TTCGTCAGAT TAACAGGTTT TAAGGGAAAT 
    TTCTTCCACG CGACGACTTT TTTTTGTTTG GTTCAAGAAT CAGTAAATGT 
    ATTCGCCTTT CATTGCAGTA GTAGGGTTTA TAGTTTCTTA AGCTAGAGGT 
    GTGAGTTTTT TTCTTCTCCT TAGGTTTTGA GATATAAATT TTGGGTTGTA 
    ATGGGGGATA TAACTTGGGT TGAAGAGGGT AATGGCTCTG CGACTTCTTC 
    GAGGAAAAGG AAAGCGAGAC CTAAACGATT CGAATTTGTA GGATGGGGTT 
    CGAGACAACT CATTGAGTTT CTACACTCTC TTGGTAAAGA TACTTCAGAA 
    ATGATCTCTC GTTATGATGT TAGTGACACT ATTGCTAAGT ATATTTCAAA 
    GGAAGGTCTT TTAGATCCTT CCAATAAGAA GAAAGTTGTG TGCGACAAAA 
    GATTGGTTTT GCTTTTCGGG ACTAGGACGA TTTTCAGAAT GAAAGTCTAT 
    GATCTCCTTG AAAAGCATTA CAAAGAGAAT CAGGATGATT CTGACTTTGA 
    TTTTCTCTAC GAGGATGAGC CGCAGATTAT TTGTCATTCG GAGAAGATAG 
    CTAAACGGAC AAGTAAGGTT GTTAAGAAAC CTAGAGGTAC TTTTGCTGCT 
    ATTGTGAGTG ATAATATCAA GCTTCTCTAC TTGAGAAAGA GCTTAGTCCA 
    GGAACTGCTC AAGTCTCCTG ATACCTTTGA GGGTAAAATG TTGGGAAGTT 
    TTGTGAGGAT CAAGTCTGAC CCTAATGATT ATCTTCAGAA GTACCCTTAT 
    CAGCTTGTTC AGGTGACAGG CGTGAAGAAG GAACATGGGA CTGATGATTT 
    TCTTCTTCAG GTTACAAATT ATGTGAAAGA TGTTTCTATA TCTGTGCTAT 
    CTGATGATAA TTTCTCCCAG GTAATATACT TAGAAGTTAG AAATAATGTT 
    CATACCTCAA TTTTTTGCTT ATGATCGATG CAAAGTCAGG TACCCATGTA 
    GTTTAAGAAC CGGCAATTGG GATTCTGTTC TAGTTATATA ACACATACTA 
    TCTTTCACTA TTACTATGTT TGACAAACGC CCCCATTTTA ACCTATATAA 
    TCTGTCGTTT ATCATAGCTT GATGTAAACT TTTTCAGGAG GAATGTGAAG 
    ATTTACATCA GAGAATAAAG AACGGACTTC TTAAGAAGCC TACTATTGTA 
    AGTTTTCTAT TAAGATTGCC AAGACATGCC ATTTTGCAGA GGTTTGGAAG 
    ATAATTATTG CAGCTCCCTC TGTTAAAGAT TTGCATTTTT TCTGTCATGT 
    ATCCCAGCGA CTTGCTAACC TTGCTGTTCA TGACATTTTG ATTTTGTAGT 
    TCTTTAATCA TAATTCATTT TGAACCTTGG ATAGGTGGAG ATGGAAGAAA 
    AAGCTAAAAA ATTACATAAA GATCAAACAA AACACTGGCT TGGAAGAGAA 
    ATTGAATTGT TAAAAAGGCT TATTGATCGG GCTAATGAGA AGGGATGGCG 
    AAGAGAGCTG TCCGAGTACC TAGATAAGAG GGAGCTTCTT CAAAATCCAG 
    ATGAACAGGC CAGGCTACTC CGCGAAGTTC CAGAAGTTAT TGGAGAGGAA 
    CTTGTACAAA ACCCTGAAGT TTCGTCCCCT GAGGCTCATA AAAGTGACAA 
    CGAGCAACGA TTGAGTGAAT CTCCATTATC GTGCATCCAT GAAACCCCAG 
    AAGCTCGCAA CCTCTTTGGT GGAGAAGATC AACAATTTAA TAACGGCTAT 
    GTGATGTCAA ACCCCATCAC AACTCCGGGA ATCACATCTT GTGCTACGGA 
    AATTAACAAG GGATTGCCAA CATGGATTGC TTCTGCAGGT GCTGAGTATC 
    TTCATGTAGA TGTAGAGCAG CCAGCAAATG GCATCATTGG AGGAGAGACG 
    CCGACTGAAG AGTCTAAAGT TTCTCAGCTT CAGTCAAGTA TACCAGTAAA 
    TAATGTCGAC AACGGATCTC AAGTTCAACC AAATCCATCA GAAGTAATCG 
    AACTGAGCGA TGATGATGAA GATGACAACG GTGATGGAGA GACCCTGGAC 
    CCTAAAGTTG AAGACGTCCG GGTTCTGTCT TATGATAAAG AGAAGTTAAA 
    CTGGTTATAC AAAGATCCTC AGGGTCTTGT ACAGGGACCA TTCTCTCTCA 
    CACAACTCAA AGCTTGGAGC GACGCAGAGT ATTTCACCAA ACAGTTCAGG 
    GTTTGGATGA CAGGAGAAAG CATGGAATCC GCAGTTTTAC TAACCGATGT 
    TCTTCGTCTA GTGTAACTAA TGCAATACTC TGAAGACTAT TAGATTCAGT 
    CAAAAGTGGT TTCAGTAATC TGTTATCGTC TGTCATTATC TTCAAATTGC 
    AGTAGGTTTT GCTCCTCCTT TTCAGTAAAC AGC

    Gene models with high sequence identity

    1. AT5G08430.1 [+] show detail - SWIB/MDM2 domain;Plus-3;GYF
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily GYF 5e-11
    superfamily SWIB/MDM2 domain 8.2e-25
    HMMSmart GYF 3.1e-07
    HMMSmart Plus-3 domain, subgroup 2.3e-35
    HMMPfam GYF 1.1e-13
    HMMPfam Plus-3 1e-19
    HMMPfam SWIB/MDM2 domain 9e-18
    Gene3D SWIB/MDM2 domain 1.4e-39
    HMMPanther GRB10 INTERACTING GYF PROTEIN 1.1e-05
    ProfileScan GYF 15.513
    ProfileScan Plus-3 21

    See the detailed result >

    AT5G08430.1

    Model type
    Protein coding
    Short Description
    SWIB/MDM2 domain;Plus-3;GYF
    Computational Description
    SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G23480.1); Has 361 Blast hits to 341 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 120; Fungi - 28; Plants - 189; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR