F17311

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17311

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F17311

Determination of introduced cDNA(s)

  • RAFL09-06-M15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-M15 - Resource: pda05111

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-M15 - full reading 
    AAAAAAAACT AGAAAGATCC GGTGATTATT TCATCATCGG CGATTATGGA 
    ATTATTCGCA TTGTTAATTA AGGTCGCCGG ACTTTTGGCC ACTGTCACCG 
    TTGGAGCCAA CGTAGTTTCC TACTCTCGTT TCCGTCGCCA GAATCTCGCG 
    AAGTTTCGCT CTCCAATCGA CGAATCTAAA GAAGTTCTCG CTGATTTCAA 
    TTCCATTGAA CACGAGGAAG GAAAATTCTT CTTTGGGTTA GCTACTGCAC 
    CTGCTCATGC GGAGGATGAT TTAGATGATG CTTGGCTCCA GTTTGCTAAA 
    GAAACACCAT GTTCAGCAGA AGAAGCAGAG GCTGCTGATA AGAAAGCTAG 
    GAGGAAGAAG GTTAAGCTTG CTGTGGGAGC TATAACCAAA GGCTTGGCCA 
    AGAACACTCA TGGCAAAGAA GATAAGAATG CAGCTGATAA GCCACCCTCT 
    AAAAATGTTG CCGCGTGGCA TAACGCTCCT CACGCGGAGG ACAGGCTTAA 
    ATTTTGGTCA GATCCTGACA AAGAAGTGAA GCTAGCCAAA GATACTGGCG 
    TTACTGTCTT TAGGATGGGA GTCGATTGGT CTAGGATCAT GCCAGTTGAG 
    CCCACCAAAG GAATTAAGGA AGCAGTTAAC TATGAGGCTG TCGAACACTA 
    TAAATGGATA CTTAAAAAAG TTCGTTCAAA TGGAATGAAG GTGATGCTAA 
    CGCTGTTTCA TCATTCATTG CCACCATGGG CAGCTGACTA TGGTGGCTGG 
    AAAATGGAGA AGACAGTCGA CTACTTTATG GACTTTACCA GGATTGTTGT 
    GGATTCCATG TATGATTTGG TAGACTCTTG GGTAACATTT AATGAACCCC 
    ATATCTTCAC CATGCTTACC TACATGTGTG GATCTTGGCC CGGTAACAAC 
    CCTGATTTTC TGGAGATAGC TACATCTACT CTACCAATGG GTGTATTCCA 
    TCGAGCCTTA CACTGGATGG CTGTTGCTCA CTCAAAGGCC TATGACTACA 
    TCCATGGGAA AATTTCTTTG AAAAAACCTT TGGTAGGGGT TGCGCACCAC 
    GTCTCCTTTA TGCGACCATA TGGGCTCTTT GATATCGGGG CTGTTACCAT 
    TAGTAATTCC CTCACTATAT TTCCATATAT CGATAGCATT TGTGAGAAGT 
    TGGATTTCAT AGGCATCAAC TACTACGGAC AGGAAGCAGT GTGTGGTGCT 
    GGACTAAAGC TTGTAGAGAC TGATGAATAC AGTGAATCGG GAAGAGGGGT 
    ATATCCTGAT GGTCTCTACC GCGTGTTGTT GATGTTCCAC GAGAGATACA 
    AACACCTGAA AGTTCCTTTT ATCGTCACAG AAAATGGCGT GTCTGATGAA 
    ACAGATGTGA TTCGACGACC TTACCTGATC GAGCATCTCC TTGCCTTATA 
    TGCTGCAATG CTAAAGGGTG TTCCTGTGCT CGGTTACATA TTCTGGACTA 
    TTTCGGACAA TTGGGAATGG GCTGATGGAT ATGGTCCAAA ATTTGGACTT 
    GTTGCGGTTG ACCGATCCCA TGATCTTGCC CGAACTCTTC GGCAATCATA 
    CCATCTCTTT TCCAAGATAG TTAAAAGTGG AAAAGTCACT CGGAAAGATC 
    GGTCTCTTGC ATGGAACGAA CTCCAAAAAG CTGCCAAAGC AGGAAAACTA 
    CGGCCATTCT ACCGAGGCGT TGATAATCAT AATCTTATGT ACGCAGATGG 
    TCTCGACAAG CCTCAATGGA GACCGTTTGT TGACCGCGAC TGGCGGTTTG 
    GTCACTACCA AATGGATGGT CTTCAAGACC CGTTGAGTCG CGTGGCTCGA 
    ACCCTTCTCA TATGGCCGCT TATCATGAAA AAGAGGATAA GAAAAGTTAA 
    GATCAAGCAC ACCGATGATG CTGGGCTTGT TCTACATCCT GCTTTAGCCT 
    CACCCTTTGA CTAGAGAAAG AGGTAGAAGA AATCCGAGTG TACAAACTCA 
    TTTCCCTGTA TGATTTGCCA AACCTTTGGG CCTTTGGCGC CATTAGAGAC 
    GATTCACCGT TTTGTTGTTA ATGTTTAAAT AAAGGCAAAA CGGCATGATG 
    TTCGGAT

    Gene models with high sequence identity

    1. AT3G06510.1 [+] show detail - Glycosyl hydrolase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 6.3e-101
    Gene3D Glycoside hydrolase, subgroup, catalytic core 9.4e-89
    FPrintScan Glycoside hydrolase, family 1 5.2e-14
    FPrintScan Glycoside hydrolase, family 1 5.2e-14
    FPrintScan Glycoside hydrolase, family 1 5.2e-14
    FPrintScan Glycoside hydrolase, family 1 5.2e-14
    FPrintScan Glycoside hydrolase, family 1 5.2e-14
    HMMPanther BETA-GLUCOSIDASE-RELATED 0
    HMMPanther Glycoside hydrolase, family 1 0
    PatternScan Glycoside hydrolase, family 1, active site 0
    HMMPfam Glycoside hydrolase, family 1 2.2e-32
    HMMPfam Glycoside hydrolase, family 1 1.3e-24

    See the detailed result >

    AT3G06510.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase superfamily protein
    Curator Summary
    Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing
    Computational Description
    SENSITIVE TO FREEZING 2 (SFR2); FUNCTIONS IN: beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to freezing; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 27 (TAIR:AT3G60120.1); Has 11582 Blast hits to 10595 proteins in 1458 species: Archae - 144; Bacteria - 8179; Metazoa - 842; Fungi - 193; Plants - 1310; Viruses - 0; Other Eukaryotes - 914 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR