F17324

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17324

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17324

Determination of introduced cDNA(s)

  • RAFL05-01-B14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-01-B14 - Resource: pda00669

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-01-B14 - full reading 
    GAAAACAGAA CAAAAAAAAA AATCTCTCTC AATCTCTCTC AGATCTGAAT 
    CCATCCATCA CCGATCTCTA ATGGCGGCAC CACCAGCATC ATCCTCGGCG 
    AGGGAAGAGT TCGTGTACCT CGCAAAGCTC GCAGAGCAAG CGGAACGTTA 
    CGAAGAAATG GTTGAATTCA TGGAAAAAGT CGCTGAAGCC GTTGACAAAG 
    ACGAACTCAC CGTCGAAGAA CGTAATCTCC TCTCCGTCGC TTACAAAAAC 
    GTAATCGGCG CTCGTCGTGC TTCCTGGAGA ATCATCTCTT CCATTGAACA 
    AAAAGAAGAG AGTCGTGGTA ACGATGACCA TGTGACCACG ATCCGTGATT 
    ACAGAAGCAA GATCGAATCT GAGTTATCGA AAATCTGTGA CGGTATTCTT 
    AAGCTTCTTG ATACTAGACT TGTTCCTGCT TCTGCTAATG GAGATTCTAA 
    GGTTTTTTAC CTTAAGATGA AGGGAGATTA TCATAGGTAT TTGGCTGAGT 
    TTAAGACTGG TCAAGAGAGG AAAGATGCTG CTGAACATAC TCTCACCGCT 
    TACAAAGCTG CTCAGGATAT TGCTAATGCT GAATTGGCTC CAACGCATCC 
    GATTCGTCTT GGTTTGGCTT TGAATTTCTC TGTGTTTTAC TATGAGATTC 
    TTAATTCTCC AGATCGTGCT TGTAATCTCG CTAAGCAGGC GTTTGATGAA 
    GCCATTGCTG AGTTAGATAC TCTTGGAGAG GAGTCATACA AGGATAGTAC 
    CTTGATCATG CAGCTTCTTC GTGACAATCT TACTCTCTGG ACTTCTGACA 
    TGCAGGACGA AAGTCCGGAG GAGATTAAAG AAGCAGCAGC ACCAAAGCCT 
    GCTGAAGAAC TGAAGGAGAT CTAAGTTTGT GGTTTCTTTT TTCAGTATTC 
    TTAAGTTATG CAATTATAAT TATGTTTCTG CTTGGTGTTT ATTTTCTAAT 
    CTTTCCTTTG CTATCCCCGA AGCTTCTAAG GCCGTCTAAT TCTTGTCCTT 
    TGTTTGCTTT TCTCAATCGT GGATGCTACT GGATTTCTGT TTTGTTTTAC 
    TTCTTCTCTT GATTGATTGC ATTTCCCGGC TTATGCCTTG TACTTGAAAC 
    TCAGTTTTCT CTCTTATTAA TGATTTGCCA TTCACCTGGT

    Gene models with high sequence identity

    1. AT1G35160.1 [+] show detail - GF14 protein phi chain
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D 14-3-3 protein 1.1e-106
    superfamily 14-3-3 protein 1.9e-106
    HMMSmart 14-3-3 protein 3.7e-203
    Coil coiled-coil 0
    HMMPfam 14-3-3 protein 1.5e-115
    PatternScan 14-3-3 protein 0
    PatternScan 14-3-3 protein 0
    HMMPIR 14-3-3 protein 1.3e-177
    FPrintScan 14-3-3 protein 3e-88
    FPrintScan 14-3-3 protein 3e-88
    FPrintScan 14-3-3 protein 3e-88
    FPrintScan 14-3-3 protein 3e-88
    FPrintScan 14-3-3 protein 3e-88
    FPrintScan 14-3-3 protein 3e-88
    HMMPanther 14-3-3 protein 2.3e-209

    See the detailed result >

    AT1G35160.1

    Model type
    Protein coding
    Short Description
    GF14 protein phi chain
    Curator Summary
    GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1
    Computational Description
    GF14 protein phi chain (GF14 PHI); FUNCTIONS IN: protein phosphorylated amino acid binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: nuclear envelope, plasma membrane, cytoplasm; EXPRESSED IN: cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 2 (TAIR:AT1G78300.1); Has 2689 Blast hits to 2679 proteins in 386 species: Archae - 0; Bacteria - 6; Metazoa - 1256; Fungi - 306; Plants - 766; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR