F17333

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17333

Determination of introduced cDNA(s)

  • RAFL04-14-J20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-14-J20 - Resource: pda00500

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-14-J20 - full reading 
    AGGCAGTGTG TTTTCTTACA GCGAAGAGCC CCAAAGAGAA GAACAAAATT 
    TCGAAAATAG AGAAAGAGAA GAAGTTGACG ATGGATTCAA AGGCGAAGCA 
    GATGATTCTT TCAGCTCTCT GCAAACACTT CTCTTTGGAT CCTGAACCTT 
    TTGTGGGCGG AGCGGGTGAA AGTGATATCA AGACACTTTA TTCTAATGTA 
    TTGAAGGCAT CTGGAAAGGA AGTATCTGCA CAAAACAACG ATGTTTTGAA 
    GTGGCTAGAT TTTGCGGAAG GTTTCTCTTC AGATTCAAAG GATTGGTTTT 
    CAGCTCTTGA AAAGTTGAAT TTAGAGTTAG CTACCAAGTC AGTGCTCTTG 
    GGAAACGGAT TGACGCCATC GGCAGCTGAT GTTGCTGTGT TTTCAGCTCT 
    GCATTCTTCA GTGCTTGGCC TCTCAGATTC AGACAAGGAG AAAGTACCAC 
    ATGTCATAAG ATGGGTGAAT TACATCCAGA ATAAAGAAGA GTTGTCGACA 
    TTATTTGCAC CAATACCTGT GAAGCTACCA GAATTTAGCT TCGAGGTACC 
    AAAACCTGCC ATTAAGGTGG AAACAAATTC TAATTCAAAA AAAGCTGCAG 
    AAGGTGTAAA GCCTGTTGAC AAGCCAGATG TGCAGCCGCA GCTGGGCACA 
    AAGAAAACTG AGCCAGAGGA ACCAAAGAAA AATGCAGCAA AAGAGAAGGA 
    TGCCAAAAAG GAAAAGAAGA AGCCTGCTGA ACCAGAACCA GCTAAGAAAG 
    AGGCAGAGCT TAGTGTCAGT TTGCTTAACA TTCAGGTTGG TCTAATTCGT 
    AAAGCATGGA AGCACCCATC GGCGGATAGT TTGCTGGTGG AAGAAATAGA 
    TGTCGGGGAG GATAAAGTGA GACAAGTAGT TAGTGGCTTA GCAAAGTTCT 
    GCAGTCCTGA GGATCTAACG AACCGCCTCG TTGCACTCAT CACAAATGTC 
    AAACCTGGAA AGCTAAGAGA TGTAATGTCA CAAGGACTGG TTCTTTGTGC 
    TTCAAGTGAA GATCACTCGG TGGTAGAGCC GTTGCTACCA CCTGCTGGTG 
    CTAAACCAGG AGAGCGTGTT TCATTTTCAG GGATTGAAGG AAAGCCAGAA 
    GATGTACTGA ACCCAAAAAA GAAGCAACTA GAGAAGATAA CACCGGGTCT 
    CTACACTGAT GAAAATGGCG TAGCCACATA CAAAGGCATA CAATTCATGA 
    CCTCGGCTGG ACCTTGCACT TCCAGCATCC CCAAGGCGAC CATCAAGTAG 
    TAAACTCAGT TGATACTTCT CTCCTCTACT CTAGCGTTTT TCTTTGATAT 
    TCGCAAACTC AGTTGGAAAA AGAAAAGATG TTCTTTTTGT CACAATTCGA 
    ATTAATCTAA AAACTTTCTT CTCAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT2G40660.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam tRNA-binding domain 1.1e-25
    Gene3D Nucleic acid-binding, OB-fold 1.3e-46
    HMMPanther ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE I 2.5e-20
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 2.5e-20
    superfamily Nucleic acid-binding, OB-fold-like 2.7e-46
    ProfileScan tRNA-binding domain 29.542

    See the detailed result >

    AT2G40660.1

    Model type
    Protein coding
    Short Description
    Nucleic acid-binding, OB-fold-like protein
    Computational Description
    Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: tRNA binding; INVOLVED IN: tRNA aminoacylation for protein translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 6072 Blast hits to 6060 proteins in 2115 species: Archae - 244; Bacteria - 4267; Metazoa - 483; Fungi - 217; Plants - 163; Viruses - 1; Other Eukaryotes - 697 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR