F17404

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17404

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F17404

Determination of introduced cDNA(s)

  • RAFL09-86-D05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-86-D05 - Resource: pda17874

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-86-D05 - full reading 
    CCGACTTTCT CAAACAATCT CTCTCTCTGG CATTTGGATT TGGAAGTGCT 
    TTTTGTATAT ATATCCAACA AAGGAATCAG ATCGGAGATG TCGGATGTTT 
    CCGGTGACGG AGATTTATCG GCGACGGTTA CTGAACATGA AGTAACTCCA 
    CAACCGCCGG TTTCTTCGGC GACGTATCCG TCATTAACGG TGTCGGCGTC 
    TTACAAAGAG AGCAGCGGAG GTAAAAGCTC GTCGAAGAGG AGACCAATAA 
    GGCCGAGTTT CGACGCTGCG GCTGATAATG AGTTTATTAC TTTGCTTCAT 
    GGCTCGGATC CAGTGAAAGT GGAGCTTAAT CGACTAGAGA ATGAAGTTAG 
    AGATAAGGAT CGGGAGTTAG GAGAAGCAAA CGCTGAGATC AAAGCGCTTA 
    GGTTGTCTGA GAGACAAAGA GAGAAAGCTG TTGAAGAGCT TACTGAGGAG 
    CTTACTAAGT TGGATGAGAA GCTCAAGTTG ACTGAATCCA TTCTCGAAAG 
    CAAAAATCTA GAAATCAAGA AAATCAATGA GGAAAAGAAA GCATCAATGG 
    CTGCTCAGTT TGCTGCTGAA GCCACTTTAA GAAGAGTCCA TGCTGCTCAA 
    AAGGATGATG ACATGCCTCC TATTGAAGCC ATCCTTGCTC CATTAGAAGC 
    TGAACTTAAG CTTGCACGAT CAGAGATTGG AAAGCTTCAA GAAGATAACA 
    GGGCTTTGGA CCGTCTGACT AAATCAAAGG AAGCTGCCTT ACTTGAAGCT 
    GAGAGGACCG TTGAAGCTGC CATGGCAAAA GCCGCTATGG TTGATGATCT 
    TCAGAATAAG AACCAGGAGC TAATGAAGCA AATTGAAATC TGTCAGGAAG 
    AAAACAAAAT TCTAGATAGA ATGCATAGGC AGAAGGTTGC TGAAGTGGAA 
    AAGCTTACTC AGACAGTACG AGAGCTAGAA GAGGCTGTTC TTGCAGGTGG 
    TGCTGCTGCA AATGCCGTGA GGGATTACCA GCGGAAATTT CAAGAGATGA 
    ATGAAGAGCG GAAAACTCTT GACCGGGAGC TTGCACGTGC AAAGGTTACA 
    GCAAACAGAG TTGCCACTGT GGTAGCAAAT GAGTGGAAAG ATGGTAATGA 
    TAAAGTGATG CCTGTGAAGC AATGGCTCGA AGAACGAAGG TTTCTACAGG 
    GAGAAATGCA GCAACTTCGT GATAAGCTCG CCATAACAGA CCGGGCTGCA 
    AAATCCGAGG CACAGTTAAA AGAGAAGTTT CAACTGCGGC TTAAAGTGCT 
    TGAGGAGACA CTTCGAGGAA CTTCAAGCAG CGCCACCAGG AACACACCCG 
    AGGCAAGAAG CATGAGTAAT GGACCTTCTC GCAGGCAGTC GCTTGGTGGA 
    GCTGAAAACT TACAAAAATT TACATCAAAC GGTGCTTTAT CAAAGAAAGC 
    TCCAGCATCT CAGATGAGGC ATTCATTGTC TATTAATTCA ACTTCGGTGT 
    TGAAGAATGC TAAAGGAACA TCTAAGTCAT TTGATGGAGG CACAAGATCC 
    GTGGATAGAG GCAAAGCACT TTTAAACGGA CCTGGGAATT ATTCCTTCAA 
    CAAGGCTACT GATGACTCTA AGGAAGCAGA GTCAGGTAAT GGGTGGAAAG 
    AAAATTCAGA GGAGAAGCCA CAAAGTGAAG ACCCTGAAGC AGCAACTGAG 
    GACAGTGTCC CTGGTGTTTT GTATGATTTA CTACAGAAAG AAGTAGTTTC 
    TTTGAGGAAA GCCTCTAATG AAAAGGATCA AAGCCTCAAA GACAAAGATG 
    ATGCCATCGA GATGCTAGCG AAGAAGGTGG AAACATTAAC AAAGGCAATG 
    GAGGTTGAAG CAAAGAAGAT GAGACGGGAA GTAGCTGCAA TGGAAAAAGA 
    AGTTGCTGCA ATGCGTGTGG AGAAAGATCA GGACGCCAGA GCCAAAAGGT 
    TTTCAAATAG CAAGAGCCCA TCCAACACCG CCCAGATTCT TGCGGGAAGA 
    GCTGCTGGAC GAAGTGGCGG GTTAACGAAG AGTACCCAGT GAAGGGAGAT 
    TCAAGAAAAT AACAAGTAAA AGAATGTCCT TGGCTCTTGT TATTCAGCTG 
    TTTTAACCTT ATATCATGGC TTTTACTTTG TTTTTGTTTA CCTCATGTGA 
    TTGGTTGTAT CACCATATAT AACTTAGCAT GCTGATAATC CCATCCTCAC 
    ACCTATAACC TAGTAAAAAG ATAAGAAAGA GAGTTTGTGA CATAGATTTG 
    GTGTTAAAGT GGTTAGAGGG AGGAGAAGAA AAGCCGAGGG AGAGAGTGAG 
    AGATGTTGAC ATTTTGGCTA ACATTTTCAT CTCTCTTTTC GGGAGTTAGT 
    TTGTTTTTGG TGTATAGGTT TGGTATTTGG CTTCTCTAGA GCTTGTGTAC 
    CTCTGATTCC TTTTATTTGT TTGTTACTCT ATTGCACTCT TTGTGTGATT 
    TATTCGTTTG TATTTTGGGT TTGCTGATAT ATAATATATG ATTTGATATA 
    TTTGAACAAA AAAA

    Gene models with high sequence identity

    1. AT1G24764.1 [+] show detail - microtubule-associated proteins 70-2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Myosin II heavy chain-like 1.1e-203

    See the detailed result >

    AT1G24764.1

    Model type
    Protein coding
    Short Description
    microtubule-associated proteins 70-2
    Curator Summary
    Member of the MAP70 protein family.
    Computational Description
    microtubule-associated proteins 70-2 (MAP70-2); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-1 (TAIR:AT1G68060.1); Has 48419 Blast hits to 29383 proteins in 2175 species: Archae - 681; Bacteria - 6937; Metazoa - 23825; Fungi - 4071; Plants - 3202; Viruses - 118; Other Eukaryotes - 9585 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR